DRSC/TRiP Functional Genomics Resources

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Protein Alignment Odc2 and odc-1

DIOPT Version :9

Sequence 1:NP_477053.2 Gene:Odc2 / 35767 FlyBaseID:FBgn0013308 Length:393 Species:Drosophila melanogaster
Sequence 2:NP_504752.1 Gene:odc-1 / 179079 WormBaseID:WBGene00003844 Length:422 Species:Caenorhabditis elegans


Alignment Length:396 Identity:154/396 - (38%)
Similarity:239/396 - (60%) Gaps:16/396 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 GDLRI----QYYDEELNIRKVIEQADLEHLDQALNICDLSSLERKLRLWHKLMPRIEPHYAVKCN 64
            ||.:|    :..|:....|.:....||:..|.:..:.||..:..:.:||.:.:|.|||.||||||
 Worm     9 GDNKIGVLPKQVDQLQMCRDIAASKDLQENDSSFMLVDLDKIIERFQLWKRELPMIEPFYAVKCN 73

  Fly    65 DDPVVVKFLADLGTGFDCASKNELKLVLGLGVSPERIIFAHPCRPASHLRYAKEQQVVNGTVDNE 129
            .|.|:::.||.||.|||||||:|:.:|:|.|||.||||:|:||:..|.:.:|.::.|...|.||.
 Worm    74 TDLVLIRILASLGCGFDCASKDEIDIVMGTGVSAERIIYANPCKTRSFIAHAMDRDVKMMTFDNP 138

  Fly   130 YEIYKLRKHYPDSNLIVRFKSEAKKALCPLGDKYGCDAEADAAALMLLAKALGLKVTGTSFHVGS 194
            .|:.|:.|.:|::.:|:|.......|.|||..|:|.|....|..|:..|...|:.|.|.||||||
 Worm   139 EELLKIAKLHPNAEMILRIAVSDPTATCPLNLKFGADPIIAAPQLLKTASEEGINVVGISFHVGS 203

  Fly   195 GCSEVEAYDRAIEKAENIFKVGEMIGHKMELLDVGGGFPGID-DEMFEEIAQSVNTSVELRFPDK 258
            ||::..||..|::.|:|:.::||.:|.||:::|:||||||.: ...||:||:::..:::..|||.
 Worm   204 GCNDASAYRNALQHAKNLCEIGEGLGFKMDIIDMGGGFPGAEHHNPFEKIAETIRDALDEFFPDT 268

  Fly   259 RIRIISEPGRFFVEAAYTLICKVHAKREVRS-------KDGKLDTMMYYLNDGIFGAF-AGMFYY 315
            ..|:|:||||||....::|:..:....||.:       ||......|||:|||::|:| ..:|.:
 Worm   269 NKRLIAEPGRFFAAGPFSLVANIIHATEVPASKITKDPKDCADHGYMYYINDGVYGSFNCILFDH 333

  Fly   316 PEEVAPELYLDEAESLPKLKSVIWGPSCDAMDKISD-LLLPNLNPGDLLGFRNMGAYTMPIASPF 379
            ...:...|:  :.:...|..|.||||:||::|.:.| .|:|.:|.|:.|.:.:|||||:..|:.|
 Worm   334 AHPIGSPLF--DTDRNEKFMSTIWGPTCDSLDLVEDKKLMPKMNVGEWLYYPDMGAYTLAAATTF 396

  Fly   380 NGFDVP 385
            |||..|
 Worm   397 NGFSKP 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Odc2NP_477053.2 LysA 21..385 CDD:223098 148/373 (40%)
PLPDE_III_ODC 30..390 CDD:143482 147/366 (40%)
odc-1NP_504752.1 LysA 17..402 CDD:223098 150/386 (39%)
PLPDE_III_ODC 39..407 CDD:143482 147/366 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159911
Domainoid 1 1.000 222 1.000 Domainoid score I1481
eggNOG 1 0.900 - - E1_COG0019
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1906
Inparanoid 1 1.050 318 1.000 Inparanoid score I1508
Isobase 1 0.950 - 0 Normalized mean entropy S945
OMA 1 1.010 - - QHG62480
OrthoDB 1 1.010 - - D306092at33208
OrthoFinder 1 1.000 - - FOG0000435
OrthoInspector 1 1.000 - - otm14327
orthoMCL 1 0.900 - - OOG6_100277
Panther 1 1.100 - - O PTHR11482
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X335
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.760

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