DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Odc1 and AT5G11880

DIOPT Version :9

Sequence 1:NP_477052.2 Gene:Odc1 / 35766 FlyBaseID:FBgn0013307 Length:394 Species:Drosophila melanogaster
Sequence 2:NP_568252.1 Gene:AT5G11880 / 831061 AraportID:AT5G11880 Length:489 Species:Arabidopsis thaliana


Alignment Length:380 Identity:91/380 - (23%)
Similarity:159/380 - (41%) Gaps:71/380 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 VERKLRLWQKLLPRIKPF--YAVKCNDDPMVVRLLAQLGAGFDCASKNEVKLVL--GFDVSPERI 101
            :.|.|..:::.|..::..  ||:|.|::..::..|..||.|....|.||::|.|  |||  |.:.
plant   107 ITRNLEAYKEALEGVRSVIGYAIKANNNLKILEHLRSLGCGAVLVSGNELRLALLAGFD--PTKC 169

  Fly   102 IFANPCRPVSHLEYAKEHQVSNGTVDNEFEVYKL----HTHYPNSNLIVRFKSEAKEAQCPL--- 159
            ||....:.:..|..|.:..|. ..||:||::..:    .......|:::|...:......|.   
plant   170 IFNGNGKSLEDLVLAAQEGVF-VNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVAT 233

  Fly   160 ---GDKFGCDAD-----VDAAALMLLAKSLELKVTGTSFHVGSGCSELQAYDRAIKKAKNLFKFG 216
               ..|||...:     :|.    :.|...|||:.|...|:||..:::           ::|:..
plant   234 GNKNSKFGIRNEKLQWFLDE----VKAHPKELKLVGAHCHLGSTITKV-----------DIFRDA 283

  Fly   217 ALL-----------GYDMDFLDIGGGFPGSDDVKFEKI----AESVNTSVQRHFPDERVHIIAEP 266
            |:|           |:::.:|:||||. |.|......:    .:.:|| |:.......:::|.||
plant   284 AVLMIEYIDEIRRQGFEVSYLNIGGGL-GIDYYHAGAVLPTPMDLINT-VRELVLSRDLNLIIEP 346

  Fly   267 GRFFVAAACTLVCKIHAKREIRNEAGKLDTVMYYLNDGVYGS-FNCILYDHQVVIAEHYLDNAES 330
            ||..:|..|   |.::....::...    |..:.:.||.... ....|||     |..:::....
plant   347 GRSLIANTC---CFVNHVTGVKTNG----TKNFIVIDGSMAELIRPSLYD-----AYQHIELVSP 399

  Fly   331 LPH----LKSLIWGPSCDALDKISEDLHLPNLNRGDLLGFRNMGAYTMPIASAFN 381
            .|.    .|..:.||.|::.|.:.:|..||...:|..|...:.|||.|.:||.:|
plant   400 TPPEAEVTKFDVVGPVCESADFLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYN 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Odc1NP_477052.2 LysA 16..391 CDD:223098 91/380 (24%)
PLPDE_III_ODC 30..391 CDD:143482 91/380 (24%)
AT5G11880NP_568252.1 PLN02537 80..489 CDD:178152 91/380 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 52 1.000 Domainoid score I4265
eggNOG 1 0.900 - - E1_COG0019
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 69 1.000 Inparanoid score I2473
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D725914at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm1172
orthoMCL 1 0.900 - - OOG6_100277
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.770

Return to query results.
Submit another query.