DRSC/TRiP Functional Genomics Resources

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Protein Alignment Odc1 and odc-1

DIOPT Version :9

Sequence 1:NP_477052.2 Gene:Odc1 / 35766 FlyBaseID:FBgn0013307 Length:394 Species:Drosophila melanogaster
Sequence 2:NP_504752.1 Gene:odc-1 / 179079 WormBaseID:WBGene00003844 Length:422 Species:Caenorhabditis elegans


Alignment Length:383 Identity:166/383 - (43%)
Similarity:230/383 - (60%) Gaps:13/383 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 RRVIEECDLQRLDQALNICDLSSVERKLRLWQKLLPRIKPFYAVKCNDDPMVVRLLAQLGAGFDC 82
            |.:....|||..|.:..:.||..:..:.:||::.||.|:||||||||.|.:::|:||.||.||||
 Worm    27 RDIAASKDLQENDSSFMLVDLDKIIERFQLWKRELPMIEPFYAVKCNTDLVLIRILASLGCGFDC 91

  Fly    83 ASKNEVKLVLGFDVSPERIIFANPCRPVSHLEYAKEHQVSNGTVDNEFEVYKLHTHYPNSNLIVR 147
            |||:|:.:|:|..||.||||:||||:..|.:.:|.:..|...|.||..|:.|:...:||:.:|:|
 Worm    92 ASKDEIDIVMGTGVSAERIIYANPCKTRSFIAHAMDRDVKMMTFDNPEELLKIAKLHPNAEMILR 156

  Fly   148 FKSEAKEAQCPLGDKFGCDADVDAAALMLLAKSLELKVTGTSFHVGSGCSELQAYDRAIKKAKNL 212
            .......|.|||..|||.|..:.|..|:..|....:.|.|.||||||||::..||..|::.||||
 Worm   157 IAVSDPTATCPLNLKFGADPIIAAPQLLKTASEEGINVVGISFHVGSGCNDASAYRNALQHAKNL 221

  Fly   213 FKFGALLGYDMDFLDIGGGFPGSDDVK-FEKIAESVNTSVQRHFPDERVHIIAEPGRFFVAAACT 276
            .:.|..||:.||.:|:||||||::... ||||||::..::...|||....:||||||||.|...:
 Worm   222 CEIGEGLGFKMDIIDMGGGFPGAEHHNPFEKIAETIRDALDEFFPDTNKRLIAEPGRFFAAGPFS 286

  Fly   277 LVCKIHAKREIRNEAGKLDT---------VMYYLNDGVYGSFNCILYDHQVVIAEHYLDNAESLP 332
            ||..|....|:  .|.|:..         .|||:||||||||||||:||...|.....|...: .
 Worm   287 LVANIIHATEV--PASKITKDPKDCADHGYMYYINDGVYGSFNCILFDHAHPIGSPLFDTDRN-E 348

  Fly   333 HLKSLIWGPSCDALDKISEDLHLPNLNRGDLLGFRNMGAYTMPIASAFNGFEVPKTLY 390
            ...|.||||:||:||.:.:...:|.:|.|:.|.:.:|||||:..|:.||||..|..:|
 Worm   349 KFMSTIWGPTCDSLDLVEDKKLMPKMNVGEWLYYPDMGAYTLAAATTFNGFSKPVPMY 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Odc1NP_477052.2 LysA 16..391 CDD:223098 166/383 (43%)
PLPDE_III_ODC 30..391 CDD:143482 162/371 (44%)
odc-1NP_504752.1 LysA 17..402 CDD:223098 164/377 (44%)
PLPDE_III_ODC 39..407 CDD:143482 162/371 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159910
Domainoid 1 1.000 222 1.000 Domainoid score I1481
eggNOG 1 0.900 - - E1_COG0019
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1906
Inparanoid 1 1.050 318 1.000 Inparanoid score I1508
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62480
OrthoDB 1 1.010 - - D306092at33208
OrthoFinder 1 1.000 - - FOG0000435
OrthoInspector 1 1.000 - - otm14327
orthoMCL 1 0.900 - - OOG6_100277
Panther 1 1.100 - - LDO PTHR11482
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R297
SonicParanoid 1 1.000 - - X335
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.840

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