DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup44A and npp-18

DIOPT Version :9

Sequence 1:NP_610343.1 Gene:Nup44A / 35762 FlyBaseID:FBgn0033247 Length:354 Species:Drosophila melanogaster
Sequence 2:NP_499740.1 Gene:npp-18 / 176748 WormBaseID:WBGene00003804 Length:363 Species:Caenorhabditis elegans


Alignment Length:338 Identity:127/338 - (37%)
Similarity:201/338 - (59%) Gaps:20/338 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VEPI--IADHKDVIHDVVFDYYGRRMATCSSDQTVKIWDEDGQGKWNVTSSWKAHSGSIWRVSWA 66
            |:|.  :..|:|:||.|.||.:|||||||:||.|:.|||....|.|..::.||.|.|::|||.||
 Worm     7 VKPFQTVGAHRDLIHCVSFDPHGRRMATCASDMTMAIWDRKPDGNWRRSAHWKCHGGAVWRVIWA 71

  Fly    67 HPEFGQVVATCSFDRTASVWEEVIGEKVSSTNTPTRRWVRRTTLVDSRTSVTDVEFAPKYLGLLL 131
            ||||||:|||||:|||..:|||.|............:|:|||.:.|:|:.|||:.|:|::|||::
 Worm    72 HPEFGQIVATCSYDRTIVIWEEQIVRSEKDLKQKESQWIRRTIISDNRSDVTDICFSPRHLGLMM 136

  Fly   132 ATASADGIIRIYEAPDIMNLSQWPVQHEI-SNKLPLSCLSWNTSTYMVTQLLAAGSDEAATPTGK 195
            |:.:..|.:||||||||::.|:|.:.||: :......|::|:.|. |...|:|.||||......|
 Worm   137 ASCNVLGTVRIYEAPDIVDASRWNLIHELQAFHTRCGCVTWSLSR-MHRPLIAVGSDEKKAENKK 200

  Fly   196 -VFLFAYSENSRKCVKIDT-VNDITDPVTDVAFAPNAGRTFHMLAVASKDLYIVNLR-------- 250
             |.::...:..||..:|:: |.|:..|:||:.|:|.:....|.|||||.|:::.|::        
 Worm   201 RVVIYENIDGLRKWQRINSLVFDLPCPITDLKFSPISMVDSHQLAVASGDVHVYNIKVARSAILE 265

  Fly   251 --GVTDATDISKLDIQTIKFSEHNCPVWRVCWNMLATMLISTGDDGCVRLWRMNYNRQWRCAAVL 313
              ||.:...::..::..:.....:...||:.:|::.:::.||..||.:|.|:..:..||    |.
 Worm   266 EDGVENPIQLADYNLIKVALLGDHRKAWRLRYNLMGSVISSTSLDGTLRSWKSLFVNQW----VK 326

  Fly   314 KAEGSGPTYEPAP 326
            .:|.:...|.|:|
 Worm   327 LSEMNVDDYVPSP 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup44ANP_610343.1 WD40 11..300 CDD:392136 117/301 (39%)
WD40 repeat 16..55 CDD:293791 20/38 (53%)
WD40 repeat 60..98 CDD:293791 23/37 (62%)
WD40 repeat 118..159 CDD:293791 19/40 (48%)
WD40 repeat 166..212 CDD:293791 14/46 (30%)
WD40 repeat 221..267 CDD:293791 14/55 (25%)
WD40 repeat 275..299 CDD:293791 8/23 (35%)
npp-18NP_499740.1 WD40 <5..250 CDD:295369 107/243 (44%)
WD40 11..>338 CDD:225201 123/331 (37%)
WD40 repeat 21..60 CDD:293791 20/38 (53%)
WD40 repeat 65..115 CDD:293791 27/49 (55%)
WD40 repeat 123..162 CDD:293791 19/38 (50%)
WD40 repeat 174..220 CDD:293791 15/46 (33%)
WD40 repeat 228..265 CDD:293791 12/36 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160160013
Domainoid 1 1.000 108 1.000 Domainoid score I4058
eggNOG 1 0.900 - - E1_KOG2445
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68701
Inparanoid 1 1.050 242 1.000 Inparanoid score I2095
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55323
OrthoDB 1 1.010 - - D375879at33208
OrthoFinder 1 1.000 - - FOG0004075
OrthoInspector 1 1.000 - - oto18870
orthoMCL 1 0.900 - - OOG6_103638
Panther 1 1.100 - - LDO PTHR11024
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1316
SonicParanoid 1 1.000 - - X3915
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.840

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