DRSC/TRiP Functional Genomics Resources

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Protein Alignment CSN4 and cops4

DIOPT Version :9

Sequence 1:NP_001163080.1 Gene:CSN4 / 35759 FlyBaseID:FBgn0027054 Length:407 Species:Drosophila melanogaster
Sequence 2:XP_005155650.1 Gene:cops4 / 325592 ZFINID:ZDB-GENE-030131-4317 Length:407 Species:Danio rerio


Alignment Length:394 Identity:284/394 - (72%)
Similarity:331/394 - (84%) Gaps:1/394 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 AALRSQLMGLINFTGTHKDQADKYRQLLKTVLTNTGQELIDGLRLFVEAIVNEHVSLVISRQILN 74
            :.:|.:|..|:|.:|:|||.|.||||:|:..|..|..|.::.|:.||||:|||:||||||||:|.
Zfish     3 SGVRQELAQLMNSSGSHKDLAGKYRQILEKALQFTDAEQLEALKAFVEAMVNENVSLVISRQLLT 67

  Fly    75 DVGSELSKLPDDLSKMLSHFTLEKVNPRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPL 139
            |..:.|..||||::|::.||||||:.|||||||||||.||.|||.|||:.:.||:||.|||||||
Zfish    68 DFCAHLPNLPDDIAKVVCHFTLEKIQPRVISFEEQVASIRQHLATIYEKQEDWRNAAQVLVGIPL 132

  Fly   140 ETGQKQYSVECKLGTYLKIARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYARVLDY 204
            |||||||:|:.||.||||||||||||:|.||||.:||||||||.|:.:|:||:.|||||||||||
Zfish   133 ETGQKQYNVDYKLDTYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDY 197

  Fly   205 RRKFIEAAQRYNELSYRKIVDQGERMTALKKALICTVLASAGQQRSRMLATLFKDERCQHLPAYG 269
            ||||||||||||||||:.||.:.||:.|||.||.||:||||||||||||||||||||||.|.|||
Zfish   198 RRKFIEAAQRYNELSYKSIVHETERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYG 262

  Fly   270 ILEKMYLERIIRRSELQEFEALLQDHQKAATSDG-SSILDRAVFEHNLLSASKLYNNITFEELGA 333
            |||||||:||||.::||||.|:|..||||.|:|| ||||||||.|||||||||||||||||||||
Zfish   263 ILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSSILDRAVIEHNLLSASKLYNNITFEELGA 327

  Fly   334 LLDIPAVKAEKIASQMITEGRMNGHIDQISAIVHFENRELLPQWDRQIQSLCYQVNSIIEKISVA 398
            ||:||..|||||||||||||||||.||||..|||||.||.||.||:||||||:|||:::||||..
Zfish   328 LLEIPPAKAEKIASQMITEGRMNGFIDQIDGIVHFETREPLPTWDKQIQSLCFQVNNLLEKISQT 392

  Fly   399 EPDW 402
            .|:|
Zfish   393 APEW 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CSN4NP_001163080.1 RPN5 <95..384 CDD:227403 229/289 (79%)
PCI 271..369 CDD:279707 80/98 (82%)
cops4XP_005155650.1 RPN5 <88..378 CDD:227403 229/289 (79%)
PCI 264..363 CDD:279707 80/98 (82%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170579569
Domainoid 1 1.000 365 1.000 Domainoid score I887
eggNOG 1 0.900 - - E1_KOG1497
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H8067
Inparanoid 1 1.050 562 1.000 Inparanoid score I1050
OMA 1 1.010 - - QHG54346
OrthoDB 1 1.010 - - D457777at33208
OrthoFinder 1 1.000 - - FOG0005728
OrthoInspector 1 1.000 - - oto39469
orthoMCL 1 0.900 - - OOG6_103354
Panther 1 1.100 - - LDO PTHR10855
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2466
SonicParanoid 1 1.000 - - X4718
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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