DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nito and SRSF9

DIOPT Version :9

Sequence 1:NP_001286174.1 Gene:nito / 35756 FlyBaseID:FBgn0027548 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_003760.1 Gene:SRSF9 / 8683 HGNCID:10791 Length:221 Species:Homo sapiens


Alignment Length:264 Identity:61/264 - (23%)
Similarity:88/264 - (33%) Gaps:106/264 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   316 LFAGNLEVTIADDELRRIFGKYGVVDDIDIKR-----PPPGTGNAFAFVRYQNLDMAHRAKIELS 375
            ::.|||...:.:.:|..:|.|||.:.:|::|.     |       |||||:::...|..|....:
Human    16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVP-------FAFVRFEDPRDAEDAIYGRN 73

  Fly   376 GQYIGKFQCKIGYGKVTPATRMWIGGLGAWTSVTQLEREFDRFGAIKKIEYQKGEPYAYIQYETV 440
            |...|:.:.::.:    |.|   .||.|.|.                                  
Human    74 GYDYGQCRLRVEF
----PRT---YGGRGGWP---------------------------------- 97

  Fly   441 EAATAAVKEMRGFPLGGPERRLRTDFAEL-PGATPAAPFKSSKPPYDESA--------------L 490
                      ||...|.|.|  |:||..| .|..|:..::..|....|:.              :
Human    98 ----------RGGRNGPPTR--RSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMV 150

  Fly   491 EYRRPEYDPY------------YEESAAYAPRGGYSPYPPRG---GY-RGRGGYRGR-----GRG 534
            ||.|.|...|            :|...:|     ...||.|.   || |.|.|.|||     .||
Human   151 EYLRKEDMEYALRKLDDTKFRSHEGETSY-----IRVYPERSTSYGYSRSRSGSRGRDSPYQSRG 210

  Fly   535 MYHY 538
            ..||
Human   211 SPHY 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nitoNP_001286174.1 RRM <56..>223 CDD:223796
RRM1_Spen 98..175 CDD:240754
RRM2_Spen 312..390 CDD:240755 20/78 (26%)
RRM3_Spen 397..467 CDD:240756 11/69 (16%)
SPOC 630..789 CDD:311609
SRSF9NP_003760.1 RRM1_SRSF9 15..86 CDD:241042 20/76 (26%)
RRM2_SRSF9 104..186 CDD:410161 19/88 (22%)
Interaction with SAFB1 188..200 5/11 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 189..221 12/26 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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