DRSC/TRiP Functional Genomics Resources

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Protein Alignment nito and NRD1

DIOPT Version :10

Sequence 1:NP_610339.1 Gene:nito / 35756 FlyBaseID:FBgn0027548 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_014148.1 Gene:NRD1 / 855470 SGDID:S000005195 Length:575 Species:Saccharomyces cerevisiae


Alignment Length:437 Identity:86/437 - (19%)
Similarity:134/437 - (30%) Gaps:156/437 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 PEDAREAKHHKPRLIIYDKMAIVEPVYKSTTRPEYRPRGHSMSPP----------------DYER 197
            |.|.......|.:..::..:|.::..:|  |.|.:...| :::||                :.||
Yeast   194 PTDLTSTDPAKQQAALFQVIAALQKHFK--TLPSHTSVG-TVAPPQAHTITEYGSRRERERERER 255

  Fly   198 Y----HYSRSPMGQGVPLDHRRPPIDPYDRY----------GPPHMHPHAVHPRDYRPLHHDYPH 248
            |    :.||||     |....:|.....|||          |.|:......:       ||.|| 
Yeast   256 YNSRRNRSRSP-----PAPFSQPSTGRKDRYPSVAQDQYSIGAPNTTFGTNN-------HHLYP- 307

  Fly   249 PPRGPPLHRGGHPHHLHGHAPPHQYAPMRPLAPRPHAPYEKPESKKDKFPNYLHHVQPEDDPLST 313
                ..|:...:||:                  ||     ||.|.....|       |:...:.:
Yeast   308 ----DELNVSNNPHY------------------RP-----KPVSYDSTLP-------PDHIKVYS 338

  Fly   314 RTLFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQNLDMAHRAKIELSGQY 378
            ||||.|.:.:.:.:.:|..:...:..|..:.:     ......|||:..:   .|.|:..|.   
Yeast   339 RTLFIGGVPLNMKEWDLANVLKPFAEVQSVIL-----NNSRKHAFVKVYS---RHEAENVLQ--- 392

  Fly   379 IGKFQCKIGYGK--VTPATRMWIGGLGAWTSVTQLEREFDRFGAIKKIEYQKGEPYAYIQYETVE 441
                    .:.|  ..|....|  |:|              ||.....:||.|  |:.|....:.
Yeast   393 --------NFNKDGALPLRTRW--GVG--------------FGPRDCCDYQHG--YSIIPMHRLT 431

  Fly   442 AATA--AVKEMRGFPLGGP-----------------------ERRLRTDFAELPGATPAAPFKS- 480
            .|..  :|....|...|.|                       .:::.||... .|.....|.|| 
Yeast   432 DADKKWSVSAQWGGTSGQPLVTGIVFEEPDIIVGEGVSSKAISQKMPTDSGR-NGPRSGKPNKSG 495

  Fly   481 -----SKPPYDESALEYRRPE--YDPYYEESAAYAPRGGYSPYPPRG 520
                 |..||..:.|....|:  ..|..::...|||.   .|.|.:|
Yeast   496 SISSISPVPYGNAPLASPPPQQYVQPMMQQPYGYAPN---QPLPSQG 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nitoNP_610339.1 RRM1_Spen 98..175 CDD:409749 4/25 (16%)
RRM2_Spen 312..390 CDD:240755 13/77 (17%)
RRM3_Spen 397..468 CDD:409750 17/95 (18%)
SPOC_RBM15-like 634..790 CDD:439207
NRD1NP_014148.1 CID_Nrd1_like 8..149 CDD:340781
RRM_NRD1_SEB1_like 336..412 CDD:409768 19/110 (17%)
Blue background indicates that the domain is not in the aligned region.

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