Protein Alignment nito and FPA

DIOPT Version :10

• Sequence 1: NP_610339.1
• Gene: nito / 35756
• FlyBaseID: FBgn0027548
• Length: 793
• Species: Drosophila melanogaster
• Sequence 2: NP_001078046.1
• Gene: FPA / 818942
• AraportID: AT2G43410
• Length: 901
• Species: Arabidopsis thaliana
• Alignment Length: 627
• Identity: 140/627 - (22%)
• Similarity: 205/627 - (32%)
• Gaps: 221/627 - (35%)

  Fly   307 EDDPLSTRTLFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQNLDMAHRAK 371
            :|....:..|:.|:|.....:.:|..:||:||.:|.|.:.     :...|||:.|::::.|..||
plant    11 DDSGFQSNNLWVGSLTPETTESDLTELFGRYGDIDRITVY-----SSRGFAFIYYRHVEEAVAAK 70

  Fly   372 IELSGQYIGKFQCKIGYGK-VTPATRMWIGGLGAWTSVTQLEREFDRFGAIKKIEYQKGEPYAYI 435
            ..|.|..:...|.||.|.: ..|...:|:||:|...|...||.||.:||.|:...:.:....|:|
plant    71 EALQGANLNGSQIKIEYARPAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFI 135

  Fly   436 QYETVEAATAAVKEMRGFPLGGPERRLRTDFAELPGATPAAPFKSSKPPYDESALEY-------- 492
            .|..::.|..| |.|.|.|:||  ..||.||           .:|..|..::.|..|
plant   136 DYYEMDDALQA-KSMNGKPMGG--SFLRVDF-----------LRSQAPKKEQWAGSYDNRNGNMN 186

  Fly   493 RRPEYDPYYEESAAYAPRGGYSP-------YPPRG-----------------------GYRGRG- 526
            .:|:|...||:.     :|...|       :||..                       .|..|.
plant   187 HKPQYPHSYEDF-----KGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNF 246

  Fly   527 ----------------GYRGR----GRGMYHYHNDVHRP-------------------------- 545
                            |.:||    .|....|.||...|
plant   247 ALVEFRSAEEARQCKEGLQGRLFNNPRIKIMYSNDELPPEQDDTSFYSGMKRSRTDMFNNDPSFV 311

  Fly   546 --PHPGSLAGSSSSVPPPG---------------GVEDEWRRPPGESYDRGARSSSREPGVERSR 593
              ||...:.||..  |..|               |.|..||||....  .|...|...||:
plant   312 SSPHSTGIPGSMR--PLRGTNERSYNGAEYNDVVGKEPNWRRPSANG--TGILPSPTGPGI---- 368

  Fly   594 SRSPLKRARSPGSDSDTSTRRNDALASASTVPDVARKCSTVWTG---ALILKSSLFPAKFHLTDG 655
            ..||.:..|.|       .|.|         ||       .|.|   |.:::.|    |....||
plant   369 LPSPAQGTRRP-------MRSN---------PD-------SWEGYDPAQLVRES----KRTRRDG 406

  Fly   656 DTDIVESLMRDEEGKHNLRITQRLRLDPPKLDDVQKRIASSS------SHAIFMGLAGST---ND 711
            ..|....:..||.......:..|....||..|.:.:.:.:..      :..:.||....|   ..
plant   407 SVDGFTPMGVDERSFGRGSVAARPIRGPPDSDHIWRGMIAKGGTPVCCARCVPMGKGIETKLPEV 471

  Fly   712 TNC-----------------------------DDASVQTRPLRNLVSYLKQKEAAGVISLLNKET 747
            .||                             :|.:..|..||    ||..|:.|||..|.:..|
plant   472 VNCSARTDLNMLAKHYAVAIGCEIVFFVPDREEDFASYTEFLR----YLSSKDRAGVAKLDDGTT 532

  Fly   748 EATGVLYAFPPCDFSTELLKRTCHSLTEEGLKEDHLVIVVVR 789
                 |:..||.||.|::|:.|         :::.|..||::
plant   533 -----LFLVPPSDFLTDVLQVT---------RQERLYGVVLK 560

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nito	NP_610339.1	RRM1_Spen	98..175	CDD:409749
		RRM2_Spen	312..390	CDD:240755	23/77 (30%)
		RRM3_Spen	397..468	CDD:409750	27/70 (39%)
		SPOC_RBM15-like	634..790	CDD:439207	42/197 (21%)
FPA	NP_001078046.1	RRM_SF	17..88	CDD:473069	22/75 (29%)
		PABP-1234	19..383	CDD:130689	94/402 (23%)
		SPOC_SF	440..559	CDD:439200	27/136 (20%)
		DUF5585	<594..>858	CDD:465521