DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nito and FPA

DIOPT Version :9

Sequence 1:NP_001286174.1 Gene:nito / 35756 FlyBaseID:FBgn0027548 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_001078046.1 Gene:FPA / 818942 AraportID:AT2G43410 Length:901 Species:Arabidopsis thaliana


Alignment Length:627 Identity:140/627 - (22%)
Similarity:205/627 - (32%) Gaps:221/627 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   307 EDDPLSTRTLFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQNLDMAHRAK 371
            :|....:..|:.|:|.....:.:|..:||:||.:|.|.:.     :...|||:.|::::.|..||
plant    11 DDSGFQSNNLWVGSLTPETTESDLTELFGRYGDIDRITVY-----SSRGFAFIYYRHVEEAVAAK 70

  Fly   372 IELSGQYIGKFQCKIGYGK-VTPATRMWIGGLGAWTSVTQLEREFDRFGAIKKIEYQKGEPYAYI 435
            ..|.|..:...|.||.|.: ..|...:|:||:|...|...||.||.:||.|:...:.:....|:|
plant    71 EALQGANLNGSQIKIEYARPAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFI 135

  Fly   436 QYETVEAATAAVKEMRGFPLGGPERRLRTDFAELPGATPAAPFKSSKPPYDESALEY-------- 492
            .|..::.|..| |.|.|.|:||  ..||.||           .:|..|..::.|..|        
plant   136 DYYEMDDALQA-KSMNGKPMGG--SFLRVDF-----------LRSQAPKKEQWAGSYDNRNGNMN 186

  Fly   493 RRPEYDPYYEESAAYAPRGGYSP-------YPPRG-----------------------GYRGRG- 526
            .:|:|...||:.     :|...|       :||..                       .|..|. 
plant   187 HKPQYPHSYEDF-----KGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNF 246

  Fly   527 ----------------GYRGR----GRGMYHYHNDVHRP-------------------------- 545
                            |.:||    .|....|.||...|                          
plant   247 ALVEFRSAEEARQCKEGLQGRLFNNPRIKIMYSNDELPPEQDDTSFYSGMKRSRTDMFNNDPSFV 311

  Fly   546 --PHPGSLAGSSSSVPPPG---------------GVEDEWRRPPGESYDRGARSSSREPGVERSR 593
              ||...:.||..  |..|               |.|..||||....  .|...|...||:    
plant   312 SSPHSTGIPGSMR--PLRGTNERSYNGAEYNDVVGKEPNWRRPSANG--TGILPSPTGPGI---- 368

  Fly   594 SRSPLKRARSPGSDSDTSTRRNDALASASTVPDVARKCSTVWTG---ALILKSSLFPAKFHLTDG 655
            ..||.:..|.|       .|.|         ||       .|.|   |.:::.|    |....||
plant   369 LPSPAQGTRRP-------MRSN---------PD-------SWEGYDPAQLVRES----KRTRRDG 406

  Fly   656 DTDIVESLMRDEEGKHNLRITQRLRLDPPKLDDVQKRIASSS------SHAIFMGLAGST---ND 711
            ..|....:..||.......:..|....||..|.:.:.:.:..      :..:.||....|   ..
plant   407 SVDGFTPMGVDERSFGRGSVAARPIRGPPDSDHIWRGMIAKGGTPVCCARCVPMGKGIETKLPEV 471

  Fly   712 TNC-----------------------------DDASVQTRPLRNLVSYLKQKEAAGVISLLNKET 747
            .||                             :|.:..|..||    ||..|:.|||..|.:..|
plant   472 VNCSARTDLNMLAKHYAVAIGCEIVFFVPDREEDFASYTEFLR----YLSSKDRAGVAKLDDGTT 532

  Fly   748 EATGVLYAFPPCDFSTELLKRTCHSLTEEGLKEDHLVIVVVR 789
                 |:..||.||.|::|:.|         :::.|..||::
plant   533 -----LFLVPPSDFLTDVLQVT---------RQERLYGVVLK 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nitoNP_001286174.1 RRM <56..>223 CDD:223796
RRM1_Spen 98..175 CDD:240754
RRM2_Spen 312..390 CDD:240755 23/77 (30%)
RRM3_Spen 397..467 CDD:240756 26/69 (38%)
SPOC 630..789 CDD:311609 42/199 (21%)
FPANP_001078046.1 RRM3_Spen 20..89 CDD:240756 23/73 (32%)
RRM3_Spen 97..165 CDD:240756 27/81 (33%)
RRM3_Spen 208..280 CDD:240756 9/71 (13%)
SPOC 441..537 CDD:285043 18/104 (17%)
YppG 761..>830 CDD:290883
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm3486
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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