DRSC/TRiP Functional Genomics Resources

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Protein Alignment nito and raver2

DIOPT Version :10

Sequence 1:NP_610339.1 Gene:nito / 35756 FlyBaseID:FBgn0027548 Length:793 Species:Drosophila melanogaster
Sequence 2:XP_001338083.5 Gene:raver2 / 797613 ZFINID:ZDB-GENE-090713-1 Length:838 Species:Danio rerio


Alignment Length:586 Identity:110/586 - (18%)
Similarity:165/586 - (28%) Gaps:260/586 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 IHNMKRSASRSPGPASRSSLSRNSRSMGRGYDNGSGVPGDSPERLSPERMRRRLDRSPSRYGSPH 81
            :|.:||  ..||.|.|.|.:||:.....   ..|:.:..|.|| |.||.:.:||:::       .
Zfish    12 VHGIKR--DNSPHPESDSPVSRHEEDAA---SEGTTILRDLPE-LEPEEIEKRLEKT-------R 63

  Fly    82 REPYMRGPPPAERPAGYKVLCVSALPPKAPDDFIEETLYREYKKFGDFSVRLAHDLDERVAYVCF 146
            ||...|           :.:.:..||....:..:.|.| |||:....|.     |.::..|:|..
Zfish    64 RELSNR-----------RKILIKNLPQDTTNQEVHEIL-REYELKYCFV-----DRNKGTAFVTL 111

  Fly   147 RTPEDAREAKHHKPRLIIYDKMAIVEPVYKSTTRPEYRPRGHSMSPPDYERYHYSRSPMGQGVPL 211
            ...:.|::|..                                                      
Zfish   112 LNGDQAQDAIR------------------------------------------------------ 122

  Fly   212 DHRRPPIDPYDRYGPPHMHPHAVHPRDYRPLHHDYPHPPRGPPLHRGGHPHHLHGHAPPHQYAPM 276
                            .:|..:|..||...                                   
Zfish   123 ----------------TLHQTSVRGRDINV----------------------------------- 136

  Fly   277 RPLAPRPHAPYEKPESKKDKFPNYLHHVQPEDDPLSTRTLFAGNLEVTIADDELRRIFGKYG--- 338
                                      .:||.|.     .|...||..|:...:.:.:...||   
Zfish   137 --------------------------QLQPTDS-----LLCVTNLPYTVTATQFQELVRSYGNIE 170

  Fly   339 ----VVDDIDIKRPPPGTGNAFAFVRYQNLDMAHRAKIELSGQYIGKFQCKIGYGKV---TPATR 396
                |..|:      .|....:.||.|...|.|.||:.||.|:.:|.....:.:..|   |.|..
Zfish   171 RCFLVYSDL------TGHSKGYGFVEYMKKDSASRARSELLGKPMGDRVLMVQWADVNQLTSADH 229

  Fly   397 MWIGGLGAWTSVTQLEREFDRFGAIKKI---EYQ---------KGEP---YAYIQYETVEAATAA 446
            :....|    .|.:|..:|:....:..|   .|:         :|.|   :|.::|||.|.|.|.
Zfish   230 LHSKCL----CVDRLPLDFEDSEELAHIFSESYKPVFCQLAQDEGSPVRGFAVVEYETAEQAEAV 290

  Fly   447 VKEMRGFPLGGPERRL---------RTDFAEL-----------PGATP---AAPFKSSKPPYDES 488
            :.||....:.|.|.||         |:..|.|           .|..|   .|.|.:|..  :.:
Zfish   291 LLEMDRQLIQGQEIRLSLCPPGTSGRSTLAALIAAQGVMLSNKKGLLPEPNLAQFLNSMT--NPA 353

  Fly   489 ALEYRRPEYDPYYEESAAYAPRGGYSPYP--PRGGYRGRGGYRGRGRGMYHYHN-DVHRPPHPGS 550
            ||:..                   ..|||  .|||..||.            || ...|||...:
Zfish   354 ALQVL-------------------MRPYPTAKRGGKFGRP------------HNLPFLRPPLTAA 387

  Fly   551 L 551
            |
Zfish   388 L 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nitoNP_610339.1 RRM1_Spen 98..175 CDD:409749 13/76 (17%)
RRM2_Spen 312..390 CDD:240755 20/84 (24%)
RRM3_Spen 397..468 CDD:409750 22/94 (23%)
SPOC_RBM15-like 634..790 CDD:439207
raver2XP_001338083.5 RRM1_RAVER2 71..140 CDD:410065 17/205 (8%)
RRM_SF 144..220 CDD:473069 20/81 (25%)
RRM_SF 231..328 CDD:473069 24/100 (24%)
Blue background indicates that the domain is not in the aligned region.

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