DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nito and Sfpq

DIOPT Version :9

Sequence 1:NP_001286174.1 Gene:nito / 35756 FlyBaseID:FBgn0027548 Length:793 Species:Drosophila melanogaster
Sequence 2:XP_036020322.1 Gene:Sfpq / 71514 MGIID:1918764 Length:788 Species:Mus musculus


Alignment Length:562 Identity:127/562 - (22%)
Similarity:182/562 - (32%) Gaps:162/562 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 HRDGAGADRITIKIHNMKRSASRSPGPASRSSLSRNSRSMGRGYDNGSGVPGDSPERLSPERMRR 68
            ||.|.|..|  ..:|:.     |||.|.  ..|::|...||.|       ||.....|.|....:
Mouse   106 HRRGGGGGR--GGLHDF-----RSPPPG--MGLNQNRGPMGPG-------PGGPKPPLPPPPPHQ 154

  Fly    69 RLDRSPSRYGSPHREPYMRGPPPAERPAGYKVLCVSALPPKAPDDFIEETLYREYKKFGDFSVRL 133
            :..:.|.:...|.:.|..:.|||.:.|        ...||..|         :|.|.        
Mouse   155 QQQQPPPQQPPPQQPPPHQQPPPHQPP--------HQQPPPPP---------QESKP-------- 194

  Fly   134 AHDLDERVAYVCFRTPEDAREAKHHKPRLIIYDKMAIVEPVYKSTT--------RPEYRPRGHSM 190
                      |..:.|..|.......|..:      ...|....||        .|...|...|.
Mouse   195 ----------VVPQGPGSAPGVSSAPPPAV------SAPPANPPTTGAPPGPGPTPTPPPAVPST 243

  Fly   191 S----PPDYERYHYSRSPMGQGVPLDHRRPP-----IDPYDRYGP-------------------P 227
            :    ||.......|.:|...|.|     ||     ..|..:.||                   |
Mouse   244 APGPPPPSTPSSGVSTTPPQTGGP-----PPPPAGGAGPGPKPGPGPGGPKGGKMPGGPKPGGGP 303

  Fly   228 HMHPHAVHPRDYRPLHHDYPHPPRGPPLHRGGHPHHLHGHAPPHQYAPMRPLAPRPHAPYEKPES 292
            .|.....||:.        ||...|.|  |||..||...|...||..|  |..|.|..  |:..|
Mouse   304 GMGAPGGHPKP--------PHRGGGEP--RGGRQHHAPYHQQHHQGPP--PGGPGPRT--EEKIS 354

  Fly   293 KKDKFPNYLHHVQPEDDPLSTR--TLFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNA 355
            ..:.|...|..::...:...|:  .||.|||...|.:||.:|:|.|||...::.|.:     |..
Mouse   355 DSEGFKANLSLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINK-----GKG 414

  Fly   356 FAFVRYQNLDMAHRAKIELSGQYIGKFQCKIGYGKVTPATRMWIGGLGAWTSVTQLEREFDRFGA 420
            |.|::.::..:|..||.||....:...|.::.:  .|.|..:.:..|..:.|...||..|.:||.
Mouse   415 FGFIKLESRALAEIAKAELDDTPMRGRQLRVRF--ATHAAALSVRNLSPYVSNELLEEAFSQFGP 477

  Fly   421 IKKIEYQKGEPYAYIQYETVEAATAAVKEMRGFPLGGPERRLRTDFAELPGATPA------APFK 479
            |::                    ...:.:.||...|    :...:||..|.|..|      ..|.
Mouse   478 IER--------------------AVVIVDDRGRSTG----KGIVEFASKPAARKAFERCSEGVFL 518

  Fly   480 SSKPPY-----------DESALEYRRPEYDPYYEESAAYAPR 510
            .:..|.           ||..|..:..:.:|.|::.....||
Mouse   519 LTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPR 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nitoNP_001286174.1 RRM <56..>223 CDD:223796 33/183 (18%)
RRM1_Spen 98..175 CDD:240754 10/76 (13%)
RRM2_Spen 312..390 CDD:240755 24/79 (30%)
RRM3_Spen 397..467 CDD:240756 11/69 (16%)
SPOC 630..789 CDD:311609
SfpqXP_036020322.1 RRM1_PSF 377..447 CDD:410000 23/74 (31%)
RRM2_PSF 453..532 CDD:410003 18/102 (18%)
NOPS_PSF 523..619 CDD:240583 8/38 (21%)
PRK12704 567..>675 CDD:237177
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167844452
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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