DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nito and Rbm15

DIOPT Version :9

Sequence 1:NP_001286174.1 Gene:nito / 35756 FlyBaseID:FBgn0027548 Length:793 Species:Drosophila melanogaster
Sequence 2:XP_003749428.1 Gene:Rbm15 / 684233 RGDID:1592713 Length:962 Species:Rattus norvegicus


Alignment Length:966 Identity:334/966 - (34%)
Similarity:446/966 - (46%) Gaps:254/966 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 RSASRSPGPASRS-----SLSRNSRSMGRGYDNGSGVPGDSPERLSPERMRR--RLDRSPSR--- 76
            :...|||....||     |.||..||...|...||.  |.|..:......||  .||:|.||   
  Rat    46 KGKERSPVKPKRSRGGEDSSSRGERSKKLGGSGGSN--GSSSGKTDSGGSRRSLHLDKSSSRGGS 108

  Fly    77 ----------------YGSP---------HREPYMRGPPPAERPAG-------------YKVLCV 103
                            |.||         ......||.....|.:|             ||.|.:
  Rat   109 REYDTGGGSSSSRLHSYSSPSTKNSSGGGESRSSSRGGGGESRSSGAASSAPGGGDGVEYKTLKI 173

  Fly   104 SALPPKAPDDFIEETLYREYKKFGDFSVRLAH-----DLDERVAYVCFRTPEDAREAKHHKPRLI 163
            |.|..:..|:.:|:.|:.|:|:|||.||:::|     ..|||||:|.||.|||||.|||.:.||:
  Rat   174 SELGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLV 238

  Fly   164 IYDKMAIVEPVYKSTTRPEYRPRGHSMSPPDYERYHYSRSPMGQGVPLDHRRPPIDPYDRYGPPH 228
            :||:...:|.||.|        |..|.||.|.:.|..|.|.:|..|. .||..   |....|...
  Rat   239 LYDRPLKIEAVYVS--------RRRSRSPLDKDTYAPSSSVVGSSVG-SHRHA---PGGGGGQRS 291

  Fly   229 MHP--HAVHPRDYR----PLHHDYPHPPRGPPLHRGGHPHHLHGHAPPHQYAPMRP---LAPR-- 282
            :.|  .|:..||||    .|....|.||  |||     |..|........|..:||   |.||  
  Rat   292 LSPGGAALGYRDYRLQQLALGRLPPPPP--PPL-----PRELERERDYPFYDRVRPAYSLEPRVG 349

  Fly   283 ---PHAPYEKPESKKDKFPNYLHHVQPEDDPLSTRTLFAGNLEVTIADDELRRIFGKYGVVDDID 344
               ..||:.:           :..:.||||..:.||||.|||::|:.:::|||.|.::||:.::|
  Rat   350 AGAGAAPFRE-----------VDEISPEDDQRANRTLFLGNLDITVTENDLRRAFDRFGVITEVD 403

  Fly   345 IKRPPPGTGNAFAFVRYQNLDMAHRAKIELSGQYIGKFQCKIGYGKVTPATRMWIGGLGAWTSVT 409
            ||||..|..:.:.|::::||||:|||||.:||:.|.:...||||||.||.||:|:||||.|..:.
  Rat   404 IKRPSRGQTSTYGFLKFENLDMSHRAKIAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLA 468

  Fly   410 QLEREFDRFGAIKKIEYQKGEPYAYIQYETVEAATAAVKEMRGFPLGGPERRLRTDFAE------ 468
            .|.|||||||.|:.|:|:||:.:||||||:::||.||...|||||||||:||||.|||:      
  Rat   469 ALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQ 533

  Fly   469 ------LP-----------GATPAAPFKSSK---PPYDESALEYRRPEYD------------PYY 501
                  ||           |.....|.:|::   ||     |.||..:.|            |..
  Rat   534 QQYLQPLPLTHYELVTDTFGHRAPDPLRSARDRTPP-----LLYRDRDRDLYPDSDWVPPPPPVR 593

  Fly   502 EESA--------AYAP-------RGGYS----------------------PYPPRGGYRGRGGYR 529
            |.||        ||.|       |.|:|                      |....|.:..|....
  Rat   594 ERSARAATSAVTAYEPLDSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPES 658

  Fly   530 GRGRGMYH-----------------YHNDVHRP--------PHP-----GSLAGSSSSVPPPGGV 564
            .|.|...|                 |::|..|.        |.|     |||..|.|        
  Rat   659 DRPRKQRHCTPSPDRSPELSSNRDRYNSDNDRSSRLLLLERPSPVRDRRGSLEKSQS-------- 715

  Fly   565 EDEWRRPPGESYDRGARSSSREPGVERSRSRSPLKRA-RSPGSDSDTST---------RRNDALA 619
             |:..|....|.:|..:..:..|    :..::|||:. ||.|:....||         ::.|   
  Rat   716 -DKRDRKNSASAERDRKHRTAAP----TEGKTPLKKEDRSDGNTPSASTSSSKQKPPSQKQD--- 772

  Fly   620 SASTVPDVAR--KCSTVWTGALILKSSLFPAKFHLTDGDTDIVESLMRDEE--GK-HNLRITQRL 679
             ..|.|..|.  |....|.|.|:||:|.||:..||..||..:..||:.:..  || ..|:|||||
  Rat   773 -GGTAPVAASSPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRL 836

  Fly   680 RLDPPKLDDVQKRI--ASSSSHAIFMGLAG------STNDTNCDDASVQTRPLRNLVSYLKQKEA 736
            |||.||||:|.:||  |..:.:||.:.:.|      |::....|.|:...|||||||||||||:|
  Rat   837 RLDQPKLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSSSATSDTAASTQRPLRNLVSYLKQKQA 901

  Fly   737 AGVISLL---NKETEATGVLYAFPPCDFSTELLKRTCHSLTEEGLKEDHLVIVVVR 789
            ||||||.   ||:.|.||||:|||||:||.:.|.....:|.:.  :||:||:::||
  Rat   902 AGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKS--EEDYLVMIIVR 955

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nitoNP_001286174.1 RRM <56..>223 CDD:223796 68/214 (32%)
RRM1_Spen 98..175 CDD:240754 37/81 (46%)
RRM2_Spen 312..390 CDD:240755 37/77 (48%)
RRM3_Spen 397..467 CDD:240756 43/69 (62%)
SPOC 630..789 CDD:311609 80/172 (47%)
Rbm15XP_003749428.1 RRM1_RBM15 168..250 CDD:240997 37/81 (46%)
RRM2_RBM15 366..452 CDD:240999 42/85 (49%)
RRM3_RBM15 455..527 CDD:241001 45/71 (63%)
SPOC 789..925 CDD:285043 67/135 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166347823
Domainoid 1 1.000 136 1.000 Domainoid score I4792
eggNOG 1 0.900 - - E1_KOG0112
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 386 1.000 Inparanoid score I1952
OMA 1 1.010 - - QHG48807
OrthoDB 1 1.010 - - D215960at33208
OrthoFinder 1 1.000 - - FOG0003417
OrthoInspector 1 1.000 - - otm45768
orthoMCL 1 0.900 - - OOG6_105436
Panther 1 1.100 - - LDO PTHR23189
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2309
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.810

Return to query results.
Submit another query.