DRSC/TRiP Functional Genomics Resources

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Protein Alignment nito and SFPQ

DIOPT Version :10

Sequence 1:NP_610339.1 Gene:nito / 35756 FlyBaseID:FBgn0027548 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_005057.1 Gene:SFPQ / 6421 HGNCID:10774 Length:707 Species:Homo sapiens


Alignment Length:570 Identity:126/570 - (22%)
Similarity:186/570 - (32%) Gaps:170/570 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 HRDGAGADRITIKIHNMKRSASRSPGPASRSSLSRNSRSMGRGYDNGSGVPGDS-PERLSPERMR 67
            ||.|.|..|  ..:|:.     |||.|.  ..|::|...||.|       ||.| |:...|....
Human    17 HRRGGGGGR--GGLHDF-----RSPPPG--MGLNQNRGPMGPG-------PGQSGPKPPIPPPPP 65

  Fly    68 RRLDRSPSRYGSPHREPYMRGPPPAERPAGYKVLCVSALPPKAPDDFIEETLYREYKKFGDFSVR 132
            .:..:.|.....|.::|....|||..:|...:      .||..|.|..:.               
Human    66 HQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQ------QPPPPPQDSSKP--------------- 109

  Fly   133 LAHDLDERVAYVCFRTPEDAREAKHHKPRLIIYDKMAIVEPVYKSTTRPEYRP----------RG 187
                       |..:.|..|.......|               .|::.|...|          .|
Human   110 -----------VVAQGPGPAPGVGSAPP---------------ASSSAPPATPPTSGAPPGSGPG 148

  Fly   188 HSMSPPDYERYHYSRSPMG--------QGVPLDHRR---PPIDPYDRYGP---PHMHPHAVHPRD 238
            .:.:||.    ..:.:|.|        .|||....:   ||..|....||   |...|....|:.
Human   149 PTPTPPP----AVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKG 209

  Fly   239 YR---------------PLHHDYPHPP-RGPPLHRGGHPHHLHGHAPPHQYAPMRPLAPRPHAPY 287
            .:               |..|  |.|| ||....|||..||...|...||       .|.|..|.
Human   210 GKMPGGPKPGGGPGLSTPGGH--PKPPHRGGGEPRGGRQHHPPYHQQHHQ-------GPPPGGPG 265

  Fly   288 EKPESKKDKFPNYLHHV----QPEDDPLSTR-TLFAGNLEVTIADDELRRIFGKYGVVDDIDIKR 347
            .:.|.|......:..::    :|.:...:.| .||.|||...|.:||.:|:|.|||...::.|.:
Human   266 GRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINK 330

  Fly   348 PPPGTGNAFAFVRYQNLDMAHRAKIELSGQYIGKFQCKIGYGKVTPATRMWIGGLGAWTSVTQLE 412
                 |..|.|::.::..:|..||.||....:...|.::.:  .|.|..:.:..|..:.|...||
Human   331 -----GKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRF--ATHAAALSVRNLSPYVSNELLE 388

  Fly   413 REFDRFGAIKKIEYQKGEPYAYIQYETVEAATAAVKEMRGFPLGGPERRLRTDFAELPGATPA-- 475
            ..|.:||.|::                    ...:.:.||...|    :...:||..|.|..|  
Human   389 EAFSQFGPIER--------------------AVVIVDDRGRSTG----KGIVEFASKPAARKAFE 429

  Fly   476 ----APFKSSKPPY-----------DESALEYRRPEYDPYYEESAAYAPR 510
                ..|..:..|.           ||..|..:..:.:|.|::.....||
Human   430 RCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPR 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nitoNP_610339.1 RRM1_Spen 98..175 CDD:409749 8/76 (11%)
RRM2_Spen 312..390 CDD:240755 24/78 (31%)
RRM3_Spen 397..468 CDD:409750 12/70 (17%)
SPOC_RBM15-like 634..790 CDD:439207
SFPQNP_005057.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..273 74/331 (22%)
3 X 3 AA repeats of R-G-G 9..27 5/11 (45%)
RRM1_PSF 296..366 CDD:410000 24/74 (32%)
RRM2_PSF 372..451 CDD:410003 18/102 (18%)
NOPS_PSF 442..538 CDD:240583 8/38 (21%)
PTZ00121 <499..>599 CDD:173412
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 579..707
Blue background indicates that the domain is not in the aligned region.

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