Sequence 1: | NP_001286174.1 | Gene: | nito / 35756 | FlyBaseID: | FBgn0027548 | Length: | 793 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_002887.2 | Gene: | RBM4 / 5936 | HGNCID: | 9901 | Length: | 364 | Species: | Homo sapiens |
Alignment Length: | 382 | Identity: | 84/382 - (21%) |
---|---|---|---|
Similarity: | 138/382 - (36%) | Gaps: | 104/382 - (27%) |
- Green bases have known domain annotations that are detailed below.
Fly 316 LFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQNLDMAHRA-----KIELS 375
Fly 376 GQYIGKFQCKIGYGKVTPATRMWIGGLGAWTSVTQLEREFDRFGAIKKIEYQKGEPYAYIQYETV 440
Fly 441 EAATAAVKEMRGFPLGGPE-------RRLRTDFAELPG-ATPAAPFKSSKP-------PYDESA- 489
Fly 490 ----LEYRRPEY----DPY---YEESA----AYAPRGGYSPYPPRGGYRGRGGYRGRGRGMYHY- 538
Fly 539 HNDVHRPPHPGSLAG----SSSSVPPPGGVEDEWRRPPGESYDR------GARSSSREPGVERS- 592
Fly 593 ----------RSRSPLKRARSP----------GSDSDTSTRRNDALASASTVPDVAR 629 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nito | NP_001286174.1 | RRM | <56..>223 | CDD:223796 | |
RRM1_Spen | 98..175 | CDD:240754 | |||
RRM2_Spen | 312..390 | CDD:240755 | 21/78 (27%) | ||
RRM3_Spen | 397..467 | CDD:240756 | 17/76 (22%) | ||
SPOC | 630..789 | CDD:311609 | 84/382 (22%) | ||
RBM4 | NP_002887.2 | RRM1_RBM4 | 2..68 | CDD:410018 | 20/70 (29%) |
RRM2_RBM4 | 78..144 | CDD:410019 | 14/67 (21%) | ||
PTZ00368 | <145..>181 | CDD:173561 | 9/39 (23%) | ||
ZnF_C2HC | 161..176 | CDD:197667 | 1/14 (7%) | ||
Interaction with TNPO3. /evidence=ECO:0000269|PubMed:12628928 | 196..364 | 36/174 (21%) | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |