DRSC/TRiP Functional Genomics Resources

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Protein Alignment nito and raver1

DIOPT Version :10

Sequence 1:NP_610339.1 Gene:nito / 35756 FlyBaseID:FBgn0027548 Length:793 Species:Drosophila melanogaster
Sequence 2:XP_021326440.1 Gene:raver1 / 553693 ZFINID:ZDB-GENE-050522-99 Length:749 Species:Danio rerio


Alignment Length:424 Identity:86/424 - (20%)
Similarity:125/424 - (29%) Gaps:148/424 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 GPPHMHPHAVHPRDYRPLHHDYP-------HPPRGPPLHRGGHPHHLHGHAPPHQYAPMRPLAPR 282
            |.|.:..|.:|.::|..|    |       :|....||.:|   .::.|..|....||...|...
Zfish   426 GNPLLWAHILHNKEYSLL----PCAGLLSDNPLAALPLQQG---INMLGEMPQGALAPALGLQNE 483

  Fly   283 PHAPYEKP--------ESKKDK----FPNYLHHVQPEDDPLSTRTLFAGNLEVTIADDELRRIFG 335
            ...|.::|        ||:...    ||           |.|:..|...|:.:      |..|.|
Zfish   484 SLGPIKQPSLSRPLGRESETPATPIGFP-----------PASSPVLQGMNMPL------LSGILG 531

  Fly   336 KYGV-VDDIDI-KRPPPGTG---NAF-----AFVRYQNLDMAHRAKIELSGQYIGKFQCKIGYGK 390
            ..|: :..:.| ..||...|   |.|     .|........||                  .|.|
Zfish   532 ADGLTLPGVSILGEPPKDVGVSQNPFLSSPSIFPSSSASTRAH------------------PYRK 578

  Fly   391 VTPATRMWIGGLGAWTSVTQLEREFDRFGAIKKIEYQKGEPYAY-IQYETVEAATAAVKEMRGFP 454
            .||                        .|::..:....|....| ::::  |:.|          
Zfish   579 RTP------------------------LGSMSNLRTNHGIHSNYNLRFQ--ESCT---------- 607

  Fly   455 LGGPERRLRTDFAELPGATPAAPFKSSKPPYDESALEYRRPEYDPYYEESAAYAPRG---GYSPY 516
               ||..|..|        |.:.....:...:.:||    |.|.......|.::..|   .|.|.
Zfish   608 ---PEFSLHQD--------PLSHLYEQQEVLENAAL----PGYGLQNSRHAGFSDAGSLFSYPPS 657

  Fly   517 PPRGGYRGRGGYR-------GRGRGMYHYHNDVHRPP--HPG--SLAGSSSSVPPPGGVEDEWRR 570
            ||:..|...|.:.       .:..||         ||  ||.  |.|..:....|.||.:..:.|
Zfish   658 PPQSSYFSFGAHSNIPSTQLNKAVGM---------PPVTHPSLFSAAPGAGMKTPIGGQKRLFSR 713

  Fly   571 --PPGESYDRGARSSSREPGVERSRSRSPLKRAR 602
              |..|....|........|:....:.|.|||.|
Zfish   714 LIPSPEPSPEGGYVGQHSQGLGGHYADSYLKRKR 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nitoNP_610339.1 RRM1_Spen 98..175 CDD:409749
RRM2_Spen 312..390 CDD:240755 17/87 (20%)
RRM3_Spen 397..468 CDD:409750 9/71 (13%)
SPOC_RBM15-like 634..790 CDD:439207
raver1XP_021326440.1 RRM1_RAVER1 92..162 CDD:410064
RRM2_RAVER1 166..242 CDD:410066
RRM3_RAVER1 252..343 CDD:410068
Blue background indicates that the domain is not in the aligned region.

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