DRSC/TRiP Functional Genomics Resources

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Protein Alignment nito and PSPC1

DIOPT Version :10

Sequence 1:NP_610339.1 Gene:nito / 35756 FlyBaseID:FBgn0027548 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_001035879.1 Gene:PSPC1 / 55269 HGNCID:20320 Length:523 Species:Homo sapiens


Alignment Length:384 Identity:82/384 - (21%)
Similarity:128/384 - (33%) Gaps:104/384 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   266 GHAPPHQYAPM------RPLAPRPHAPYEKPESKKDKFPNYLHHVQPEDDPLSTR-TLFAGNLEV 323
            |.:.|...|.|      .|..|.|..|.:.|:.:.....:....::|.:...:.| .||.|||..
Human    27 GESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTIDIKSFLKPGEKTYTQRCRLFVGNLPT 91

  Fly   324 TIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQNLDMAHRAKIELSGQYIGKFQCKIGY 388
            .|.:::.:|:|.:||...::.|.|     ...|.|:|.::..:|..||.||.|..:.....:|.:
Human    92 DITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 151

  Fly   389 GKVTPATRMWIGGLGAWTSVTQLEREFDRFGAIKKIEYQKGEPYAYIQYETVEAATAAVKEMRGF 453
              .|....:.:..|....|...||:.|.:||.::|         |.:..:....||.     :||
Human   152 --ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEK---------AVVVVDDRGRATG-----KGF 200

  Fly   454 PLGGPERRLRTDFAELPGATPAAPFKSSKPPYDESALEYRRPEYDPYYEESAAYAPRGG------ 512
                      .:||             :||| ...|||                  |.|      
Human   201 ----------VEFA-------------AKPP-ARKALE------------------RCGDGAFLL 223

  Fly   513 -YSPYP----PRGGYRGRGGYRGR-GRGMYHYHNDVHRPPHPGSLAGSSSSVPPPGGVE------ 565
             .:|.|    |...:....|...: .:....||.:..:||.          ...||..|      
Human   224 TTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYHKEREQPPR----------FAQPGTFEFEYASR 278

  Fly   566 ----DEWRRPPGESYDRGARSSSR--EPGVERSRSRSPLKRARSPGSDSDTSTRRNDAL 618
                ||..:...|..||..|.:..  |..:|.:|....|...|..........||.:.|
Human   279 WKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLMRQDLMRRQEELRRLEEL 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nitoNP_610339.1 RRM1_Spen 98..175 CDD:409749
RRM2_Spen 312..390 CDD:240755 23/78 (29%)
RRM3_Spen 397..468 CDD:409750 14/70 (20%)
SPOC_RBM15-like 634..790 CDD:439207
PSPC1NP_001035879.1 RRM1_PSP1 81..151 CDD:409999 23/74 (31%)
Sufficient for paraspeckles localization. /evidence=ECO:0000269|PubMed:16148043 125..358 56/281 (20%)
RRM2_PSP1 157..236 CDD:410002 26/134 (19%)
NOPS_PSPC1 227..320 CDD:240584 21/102 (21%)
Sufficient for perinucleolar caps localization and interaction with NONO. /evidence=ECO:0000269|PubMed:16148043 231..358 23/117 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 460..523
Blue background indicates that the domain is not in the aligned region.

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