Sequence 1: | NP_001286174.1 | Gene: | nito / 35756 | FlyBaseID: | FBgn0027548 | Length: | 793 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_989204.1 | Gene: | rbm4b / 394812 | XenbaseID: | XB-GENE-494431 | Length: | 338 | Species: | Xenopus tropicalis |
Alignment Length: | 345 | Identity: | 77/345 - (22%) |
---|---|---|---|
Similarity: | 127/345 - (36%) | Gaps: | 49/345 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 316 LFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQNLDMAHRAKIELSGQYIG 380
Fly 381 KFQCKIGY--GKVTPATRMWIGGLGAWTSVTQLEREFDRFGAIKKIEYQKGEPYAYIQYETVEAA 443
Fly 444 TAAVKEMRGFPLGGPERRLRTDFAELPGATPAAPFK------------SSKPPYDESALEYRRPE 496
Fly 497 YDPYYEESAAYAPRGGYSPYPP--------RGGYRGRGGYRGRGR-GMYHYHNDVH-RPPHPGSL 551
Fly 552 AGSSSSVPPPGGVEDEWR-RPPGESYDRGARSSSRE-PGVERSRSRSPLKRARSPGSDSD--TST 612
Fly 613 RRNDALASASTVPDVARKCS 632 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nito | NP_001286174.1 | RRM | <56..>223 | CDD:223796 | |
RRM1_Spen | 98..175 | CDD:240754 | |||
RRM2_Spen | 312..390 | CDD:240755 | 17/75 (23%) | ||
RRM3_Spen | 397..467 | CDD:240756 | 13/69 (19%) | ||
SPOC | 630..789 | CDD:311609 | 2/3 (67%) | ||
rbm4b | NP_989204.1 | RRM_SF | 2..68 | CDD:388407 | 17/70 (24%) |
RRM_SF | 78..144 | CDD:388407 | 14/67 (21%) | ||
ZnF_C2HC | 161..176 | CDD:197667 | 1/14 (7%) | ||
COG5222 | <162..>201 | CDD:227547 | 9/47 (19%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |