DRSC/TRiP Functional Genomics Resources

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Protein Alignment nito and rbm4b

DIOPT Version :9

Sequence 1:NP_001286174.1 Gene:nito / 35756 FlyBaseID:FBgn0027548 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_989204.1 Gene:rbm4b / 394812 XenbaseID:XB-GENE-494431 Length:338 Species:Xenopus tropicalis


Alignment Length:345 Identity:77/345 - (22%)
Similarity:127/345 - (36%) Gaps:49/345 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   316 LFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQNLDMAHRAKIELSGQYIG 380
            ||.|||.......||:.:|.::|.|.:.||.:       .:.||..::...|..|...|:...:.
 Frog     4 LFVGNLPPEATQSELKSLFEQFGRVTECDIIK-------NYGFVHMEDRKAADEAVHNLNHYKLH 61

  Fly   381 KFQCKIGY--GKVTPATRMWIGGLGAWTSVTQLEREFDRFGAIKKIEYQKGEPYAYIQYETVEAA 443
            .....:.:  ||...:|::.:..|....:..:|..:|:.:||:.:.:..|  .||::..|....|
 Frog    62 SVPINVE
HSRGKPKASTKLHVSNLSTSCTSEELRAKFEEYGAVLECDIVK--DYAFVHMERSAEA 124

  Fly   444 TAAVKEMRGFPLGGPERRLRTDFAELPGATPAAPFK------------SSKPPYDESALEYRRPE 496
            ..|:|.:......|....::...:.| ..||....:            |.:.|.|:...|     
 Frog   125 LDAIKNLDNTEFKGKRMHVQLSTSRL-RVTPGMGERTRCYRCGKEGHWSKECPLDQMTKE----- 183

  Fly   497 YDPYYEESAAYAPRGGYSPYPP--------RGGYRGRGGYRGRGR-GMYHYHNDVH-RPPHPGSL 551
                .|::..|.|.....||.|        |..|..|..|..|.| .:..|:.... ||....:|
 Frog   184 ----LEQAPGYPPESFPDPYGPMRSAAAAYRTAYAHRVFYDERERFSIVDYYQRYRVRPSSYDAL 244

  Fly   552 AGSSSSVPPPGGVEDEWR-RPPGESYDRGARSSSRE-PGVERSRSRSPLKRARSPGSDSD--TST 612
            .....:..|.......:| |.....|:|.......| |.....|.||||:|:.|..|..:  .:.
 Frog   245 IERRLTALPSAATTVSYRERIESFPYERHLLPPPPELPSSYYPRERSPLRRSSSASSSMEIYRTE 309

  Fly   613 RRNDALASASTVPDVARKCS 632
            ||...:..:..|.|  .:||
 Frog   310 RRLSPIMRSPFVDD--PRCS 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nitoNP_001286174.1 RRM <56..>223 CDD:223796
RRM1_Spen 98..175 CDD:240754
RRM2_Spen 312..390 CDD:240755 17/75 (23%)
RRM3_Spen 397..467 CDD:240756 13/69 (19%)
SPOC 630..789 CDD:311609 2/3 (67%)
rbm4bNP_989204.1 RRM_SF 2..68 CDD:388407 17/70 (24%)
RRM_SF 78..144 CDD:388407 14/67 (21%)
ZnF_C2HC 161..176 CDD:197667 1/14 (7%)
COG5222 <162..>201 CDD:227547 9/47 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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