DRSC/TRiP Functional Genomics Resources

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Protein Alignment nito and nonA

DIOPT Version :10

Sequence 1:NP_610339.1 Gene:nito / 35756 FlyBaseID:FBgn0027548 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_727962.1 Gene:nonA / 32603 FlyBaseID:FBgn0004227 Length:742 Species:Drosophila melanogaster


Alignment Length:221 Identity:50/221 - (22%)
Similarity:86/221 - (38%) Gaps:36/221 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   304 VQPEDDPLSTR-----TLFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQN 363
            ::|.:.|..|:     .|:.|||...|.|||||.:|..||.:.:|.     ......|.|::...
  Fly   287 LEPVEVPTETKFSGRNRLYVGNLTNDITDDELREMFKPYGEISEIF-----SNLDKNFTFLKVDY 346

  Fly   364 LDMAHRAKIELSGQYIGKFQCKIGYGKVTPATRMWIGGLGAWTSVTQLEREFDRFGAIKKIEY-- 426
            ...|.:||..|.|......|.::.:  ...||.:.:..|..:.|...|.:.|:.||.|::...  
  Fly   347 HPNAEKAKRALDGSMRKGRQLRVRF--APNATILRVSNLTPFVSNELLYKSFEIFGPIERASITV 409

  Fly   427 -----QKGEPYAYIQYETVEAATAAVK--EMRGFPLGGPERRLRTDFAELPGATPAAPFKSSKPP 484
                 ..||  ..:::....:|:|.::  ..:.|.|....|....|..|:...|...|       
  Fly   410 DDRGKHMGE--GIVEFAKKSSASACLRMCNEKCFFLTASLRPCLVDPMEVNDDTDGLP------- 465

  Fly   485 YDESALEYRRPEYDPYYEESAAYAPR 510
              |.|...:.|:::    :..:..||
  Fly   466 --EKAFNKKMPDFN----QERSIGPR 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nitoNP_610339.1 RRM1_Spen 98..175 CDD:409749
RRM2_Spen 312..390 CDD:240755 23/82 (28%)
RRM3_Spen 397..468 CDD:409750 15/79 (19%)
SPOC_RBM15-like 634..790 CDD:439207
nonANP_727962.1 RRM1_p54nrb_like 301..371 CDD:409769 22/74 (30%)
RRM2_p54nrb_like 377..456 CDD:409770 15/80 (19%)
NOPS_NONA_like 447..546 CDD:240580 10/52 (19%)
DUF5401 <499..>618 CDD:375164
PTZ00121 <508..730 CDD:173412
Blue background indicates that the domain is not in the aligned region.

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