DRSC/TRiP Functional Genomics Resources

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Protein Alignment nito and Raver2

DIOPT Version :10

Sequence 1:NP_610339.1 Gene:nito / 35756 FlyBaseID:FBgn0027548 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_898845.1 Gene:Raver2 / 242570 MGIID:2443623 Length:673 Species:Mus musculus


Alignment Length:609 Identity:114/609 - (18%)
Similarity:177/609 - (29%) Gaps:230/609 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   304 VQPEDDPLSTRTLFAGNLEVTIADDELRRIFGKYGVVDDIDIKR------PPPGTGNAFAFVRYQ 362
            :||.|     ..|...||.::...:|...:...||     :|:|      ...|....:.||.|.
Mouse   126 LQPTD-----ALLCITNLPISFTLEEFEELVRAYG-----NIERCFLVYSEVTGHSKGYGFVEYM 180

  Fly   363 NLDMAHRAKIELSGQYIGKFQCKIGYGKVTPATRMWIGGLGAWTSVTQLERE--------FDR-- 417
            ..|.|.:|::||.|:.:|             |:.::    ..|..|..|..|        .|:  
Mouse   181 KKDFAAKARLELLGRQMG-------------ASALF----AQWMDVNLLASELIHSKCLCIDKLP 228

  Fly   418 ------------FGAIKK--------IEYQKGEPYAYIQYETVEAATAAVKEMRGFPLGGPERRL 462
                        |..|.|        .|...|..:|.::|.|.|.|....:...|..:.|.:.:|
Mouse   229 SDYSDSEELLQLFSGIHKPVFCQLAQDEGSHGGGFAVVEYSTAEHAEEVQQVADGITIKGSQVQL 293

  Fly   463 ---------RTDFAE---------------LPGATPAAPFKS-------------------SKP- 483
                     |:..|.               ||...|....||                   .|| 
Mouse   294 SFCAPGAPGRSTLAVLIAAQRAMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQLCGRAMKPV 358

  Fly   484 ----PYDESALEYRRPEYDPYYEESAAYAPRG--------GYSPYP---------PRGGYRGRGG 527
                |.....|....|....::.::...:..|        ..||.|         .......:.|
Mouse   359 LGVAPSLSHLLSPSLPSAILHFSKAQQSSAVGNTSSLILQNLSPLPLIQQQLMKFDNAHTNNKPG 423

  Fly   528 YRGRGRGM-----------------YHYHNDVHR-----PPHP------GSLAGSSSSVPP---- 560
            ..|....|                 ..:|.:.|:     ||..      |.|...|:.:|.    
Mouse   424 LLGEPPAMVLQPALAIGPPLPLKTDLGHHGEAHKTSNLIPPQTTLAAGLGMLPFFSNQLPAGQAG 488

  Fly   561 PGGVEDEWRRPPGESYDRGARSSSRE-----PGVE-----RSRSRSPLKRARSP--GSDSDTS-- 611
            ||....:.::....|....:.|.|:.     ||:.     ....::|..:.:..  .|.:.||  
Mouse   489 PGRGTTQEKQSASVSISEASFSGSQHYLQTFPGLPAGGPLTGNQKTPQSQPKGTEVASKNQTSLL 553

  Fly   612 --------TRRNDALASASTVPDVARKCSTVWTGALILKSSLFPAKFHLTDGDTDIVESLMRDEE 668
                    ..:|..|..||.:|.|.  .||...|        .|.|   |...::|::::.:..|
Mouse   554 GEPPKEIRLSKNPYLNLASVLPSVC--LSTAGKG--------MPPK---TGIASNILDAISQGSE 605

  Fly   669 GKHNLRITQRLRLDPPKLDDVQKRIASSSSHAIFMGLAGSTNDTNCDDASVQTRPLRNL---VSY 730
            .:|.|                :|.||.|.|               .:|.: |...|||.   .||
Mouse   606 SQHAL----------------EKCIAYSPS---------------IEDYA-QASSLRNEKRGSSY 638

  Fly   731 LKQKEAAGVISLLNKETEATGVLY 754
            |......|.:.|..:..:.|||.|
Mouse   639 LISAPEGGPVELAGQHPQDTGVSY 662

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nitoNP_610339.1 RRM1_Spen 98..175 CDD:409749
RRM2_Spen 312..390 CDD:240755 19/83 (23%)
RRM3_Spen 397..468 CDD:409750 19/109 (17%)
SPOC_RBM15-like 634..790 CDD:439207 27/124 (22%)
Raver2NP_898845.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..34
RRM1_RAVER2 59..128 CDD:410065 0/1 (0%)
RRM2_RAVER2 132..208 CDD:410067 21/97 (22%)
RRM3_RAVER2 218..314 CDD:410069 16/95 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 481..549 10/67 (15%)
Blue background indicates that the domain is not in the aligned region.

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