DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nito and raver1

DIOPT Version :10

Sequence 1:NP_610339.1 Gene:nito / 35756 FlyBaseID:FBgn0027548 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_001121520.1 Gene:raver1 / 100158642 XenbaseID:XB-GENE-1007876 Length:701 Species:Xenopus tropicalis


Alignment Length:377 Identity:79/377 - (20%)
Similarity:113/377 - (29%) Gaps:161/377 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   308 DDPLSTRTLFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQNLDMAHRAKI 372
            |.|||:..:..|      ...:|....|| .::.|:.:..|.|..|                   
 Frog   402 DSPLSSLYVAMG------LSPQLTPQPGK-NLMSDLGVAGPVPSVG------------------- 440

  Fly   373 ELSGQYIGKFQCKIGYGKVTPATRMWIGGLG-AWTS----------VTQLEREFDRFGAIKKIEY 426
                     ..|.:|    .||.:.::|.|| .|.|          :..|:::.|...::     
 Frog   441 ---------LPCDLG----APAAQSFLGQLGPEWDSPPPTPVLGSLLAGLQKQGDSGMSL----- 487

  Fly   427 QKGEPYAYIQYETVEAATAAVKEMRGFPLGGPERRLRTDFAELPGATPAAPFKSSKP-------- 483
             .|||...:             .:...|.|....:|.:..|..|.:.| |||| .||        
 Frog   488 -LGEPPRDV-------------NIHNTPFGNYPSQLPSSGAMGPPSKP-APFK-QKPMGTRNASV 536

  Fly   484 --------PYDESALEYRRPEYDPY-YEES--------AAYAPRGGYSPYPPRGGYRGRGGYRGR 531
                    |.|..:.:|  |:..|: |.:|        .:|..|...|| |.|        :|.|
 Frog   537 SMQDSLLTPTDSYSFDY--PDLPPHRYSQSRDHIVPSLGSYESRNKVSP-PSR--------FRER 590

  Fly   532 GRGMYHYHNDVHRPPHPGSLAGSSSS--------------------VPP--PGGVE---DEWRRP 571
            ...|        .||.|...|||.:|                    :||  ||||.   :|...|
 Frog   591 SNSM--------PPPLPPFSAGSPTSYFTSGLQAGLKQTYLNKAVGMPPSSPGGVPLGIEELSPP 647

  Fly   572 PG---------------------ESYDRGARSSSREPGVERSRSRSPLKRAR 602
            .|                     |....||.......|:....:.|.|||.|
 Frog   648 SGNVFKTPIGAQKRGFSHLIPSPEPSPEGAYIGQHSQGLGGHYADSYLKRKR 699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nitoNP_610339.1 RRM1_Spen 98..175 CDD:409749
RRM2_Spen 312..390 CDD:240755 11/77 (14%)
RRM3_Spen 397..468 CDD:409750 13/81 (16%)
SPOC_RBM15-like 634..790 CDD:439207
raver1NP_001121520.1 RRM1_RAVER1 66..135 CDD:410064
RRM2_RAVER1 139..215 CDD:410066
half-pint 155..>467 CDD:130706 21/103 (20%)
RRM_SF 225..309 CDD:473069
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.