DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8728 and Pmpca

DIOPT Version :9

Sequence 1:NP_610333.1 Gene:CG8728 / 35748 FlyBaseID:FBgn0033235 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_775272.1 Gene:Pmpca / 66865 MGIID:1918568 Length:524 Species:Mus musculus


Alignment Length:496 Identity:263/496 - (53%)
Similarity:347/496 - (69%) Gaps:23/496 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 PLTEPLPNLPEAVYAAPLAESAI-TKVTTLPNGLRIASEPRYGQFCTVGLVIDSGPRYEVAYPSG 134
            ||:.|||.:|:.::|....:... ||||||.||||:||:.::|||||||::|:||.|||..|.||
Mouse    42 PLSSPLPGVPKPIFATVDGQEKFETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSG 106

  Fly   135 VSHFLEKLAFNSTVNFPNKDAILKELEKNGGICDCQSSRDTLIYAASIDSRAIDSVTRLLADVTL 199
            ::||||||||:||..|.:||.||..|||:|||||||:||||.:||.|.||:.:|:|..|||||.|
Mouse   107 IAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVDLLADVVL 171

  Fly   200 RPTLSDQEVSLARRAVNFELETLGMRPEQEPILMDMIHAAAFRDNTLGLPKLCPLENLDHINRNV 264
            .|.|:|:|:.:.|.||.||||.|.|||:.||:|.:|||.||||:||:||.:.||:||:..|:|.|
Mouse   172 HPRLTDEEIEMTRMAVQFELEDLNMRPDPEPLLTEMIHEAAFRENTVGLHRFCPVENIAKIDREV 236

  Fly   265 LMNYLKYHHSPKRMVIAGVGVDHDELVSHVQRYFVEDKAIWETEALEDSGPKQVDTSIAQYTGGL 329
            |.:|||.:::|.|||:|||||:|:.||...::|.|..:..|..     .|...||.|:||||||:
Mouse   237 LHSYLKNYYTPDRMVLAGVGVEHEHLVECARKYLVGAEPAWGA-----PGTVDVDRSVAQYTGGI 296

  Fly   330 VKEQCEI--------PIYAAAGLPELAHVILGFEGCSHQDKDFVPLCVLNIMMGGGGSFSAGGPG 386
            :|.:.::        ||      |||.|:::|.|.||..:.||:|..|||:||||||||||||||
Mouse   297 IKVERDMSNVSLGPTPI------PELTHIMVGLESCSFLEDDFIPFAVLNMMMGGGGSFSAGGPG 355

  Fly   387 KGMYSRLYTKVLNRYHWMYSATAYNHAYGDCGLFCVHGSAPPQHMNDMVEVLTREMMGMAAEPGR 451
            |||:||||..||||:||||:||:|:|:|.|.||.|:|.||.|:.:.:|||::|:|.:.|......
Mouse   356 KGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGRTVDL 420

  Fly   452 EELMRSKIQLQSMLLMNLESRPVVFEDVGRQVLVTGQRKRPQHFIKEIESVTAADIQRVAQRLLS 516
            .||.|:|.||.|||:||||||||:|||||||||.|..||.|......|.:|...||:|||.::|.
Mouse   421 VELERAKTQLMSMLMMNLESRPVIFEDVGRQVLATHSRKLPHELCTLIRNVKPEDIKRVASKMLR 485

  Fly   517 SPPSVAARGDIHNLPEMSHITNAVSGSGRTG-LGRRLSLFK 556
            ..|:|||.||:.:||...||..|:  |.|.| |.|...||:
Mouse   486 GKPAVAALGDLTDLPTYEHIQAAL--SSRNGHLPRSYRLFR 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8728NP_610333.1 PqqL 76..532 CDD:223685 249/464 (54%)
Peptidase_M16 104..253 CDD:279066 90/148 (61%)
Peptidase_M16_C 259..461 CDD:282978 101/209 (48%)
PmpcaNP_775272.1 PqqL 64..503 CDD:223685 246/449 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847176
Domainoid 1 1.000 211 1.000 Domainoid score I2796
eggNOG 1 0.900 - - E1_COG0612
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6078
Inparanoid 1 1.050 520 1.000 Inparanoid score I1259
Isobase 1 0.950 - 0 Normalized mean entropy S1277
OMA 1 1.010 - - QHG53769
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003938
OrthoInspector 1 1.000 - - oto92968
orthoMCL 1 0.900 - - OOG6_102381
Panther 1 1.100 - - LDO PTHR11851
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2194
SonicParanoid 1 1.000 - - X2236
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.740

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