DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8728 and Pmpcb

DIOPT Version :9

Sequence 1:NP_610333.1 Gene:CG8728 / 35748 FlyBaseID:FBgn0033235 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_071790.1 Gene:Pmpcb / 64198 RGDID:621297 Length:489 Species:Rattus norvegicus


Alignment Length:532 Identity:144/532 - (27%)
Similarity:239/532 - (44%) Gaps:76/532 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 RHTW---RTFP-RLMATKVTSLGGDEVGSGTGIGQITGGVRTSDGPQKVNTPSKEIVTHLPPLTE 74
            |..|   |..| |..|.:....|||.:.|            |...||.|                
  Rat    16 RRLWGFTRRLPLRAAAAQPLYFGGDRLRS------------TQAAPQVV---------------- 52

  Fly    75 PLPNLPEAVYAAPLAESAITKVTTLPNGLRIASEPRYGQFCTVGLVIDSGPRYEVAYPSGVSHFL 139
              .|:||            |:||.|.||||:|||......|||||.||:|.|||....:|.:|||
  Rat    53 --LNVPE------------TQVTCLENGLRVASENSGISTCTVGLWIDAGSRYENEKNNGTAHFL 103

  Fly   140 EKLAFNSTVNFPNKDAILKELEKNGGICDCQSSRDTLIYAASIDSRAIDSVTRLLADVTLRPTLS 204
            |.:||..|......|..| |:|..|...:..:||:..:|.|...|:.:.....:|||:....||.
  Rat   104 EHMAFKGTKKRSQLDLEL-EIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLG 167

  Fly   205 DQEVSLARRAVNFELETLGMRPEQEPILMDMIHAAAFRDNTLGLPKLCPLENLDHINRNVLMNYL 269
            :.|:...|..:..|::.  :....:.::.|.:||.|:::..||...|.|.||:..|:|..|::|:
  Rat   168 EAEIERERGVILREMQE--VETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYI 230

  Fly   270 KYHHSPKRMVIAGV-GVDHDELVSHVQRYFVEDKAI--WETEALEDSGPKQVDTSIAQYTGGLVK 331
            ..|:...|:|:|.. ||.|:||:...:.:|.:....  .:..||..          .::||..::
  Rat   231 TTHYKGPRIVLAAAGGVCHNELLELAKFHFGDSLCAHKGDVPALPP----------CKFTGSEIR 285

  Fly   332 EQCEIPIYAAAGLPELAHVILGFEGCSHQDKDFVPLCVLNIMMGG-GGSFSAGGPGKGMYSRLYT 395
            .:.:       .:| |||:.:..|.......|.:.|.|.|.::|. ..||   |.|..:.|:| .
  Rat   286 VRDD-------KMP-LAHLAVAIEAVGWTHPDTIRLMVANTLIGNWDRSF---GGGMNLSSKL-A 338

  Fly   396 KVLNRYHWMYSATAYNHAYGDCGLFCVHGSAPPQHMNDMVEVLTREMMGMAAEPGREELMRSKIQ 460
            ::....:..:|..::|.:|.|.||:.::.......:.||:..:.:|.|.:.......|:.|:|..
  Rat   339 QLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATVADMLHAVQKEWMRLCTAVSESEVARAKNL 403

  Fly   461 LQSMLLMNLESRPVVFEDVGRQVLVTGQRKRPQHFIKEIESVTAADIQRVAQR-LLSSPPSVAAR 524
            |::.:|:.|:....:.||:|||:|...:|.........|::|.|..::.|..: :....|::||.
  Rat   404 LKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAEMVREVCTKYIYGKSPAIAAL 468

  Fly   525 GDIHNLPEMSHI 536
            |.|..||:.:.|
  Rat   469 GPIERLPDFNQI 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8728NP_610333.1 PqqL 76..532 CDD:223685 128/460 (28%)
Peptidase_M16 104..253 CDD:279066 48/148 (32%)
Peptidase_M16_C 259..461 CDD:282978 47/205 (23%)
PmpcbNP_071790.1 PqqL 46..478 CDD:223685 132/486 (27%)
Peptidase_M16 68..215 CDD:279066 48/149 (32%)
Peptidase_M16_C 220..404 CDD:282978 47/205 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0612
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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