DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8728 and Pmpca

DIOPT Version :9

Sequence 1:NP_610333.1 Gene:CG8728 / 35748 FlyBaseID:FBgn0033235 Length:556 Species:Drosophila melanogaster
Sequence 2:XP_038960652.1 Gene:Pmpca / 296588 RGDID:727897 Length:538 Species:Rattus norvegicus


Alignment Length:542 Identity:269/542 - (49%)
Similarity:365/542 - (67%) Gaps:34/542 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 GDEVGSGT---GIGQITGGVRTSDGPQKVNTPSKEIVTH---LP--PLTEPLPNLPEAVYAAPLA 89
            |:..|...   |:|::|   |......:..:|:....:.   .|  ||:.|||.:|:.::|....
  Rat    13 GERAGDWNLVEGVGRVT---RLEPSRPRFGSPAHRRFSSGATYPNIPLSSPLPGVPKPIFATVDG 74

  Fly    90 ESAI-TKVTTLPNGLRIASEPRYGQFCTVGLVIDSGPRYEVAYPSGVSHFLEKLAFNSTVNFPNK 153
            :... ||||||.||||:||:.::|||||:|::|:||.|||..|.||::||||||||:||..|.:|
  Rat    75 QEKFETKVTTLDNGLRVASQNKFGQFCTLGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDSK 139

  Fly   154 DAILKELEKNGGICDCQSSRDTLIYAASIDSRAIDSVTRLLADVTLRPTLSDQEVSLARRAVNFE 218
            |.||..|||:|||||||:||||.:||.|.||:.:|:|..|||||.|.|.|:|:|:.:.|.||.||
  Rat   140 DEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVGLLADVVLHPRLTDEEIEMTRMAVQFE 204

  Fly   219 LETLGMRPEQEPILMDMIHAAAFRDNTLGLPKLCPLENLDHINRNVLMNYLKYHHSPKRMVIAGV 283
            ||.|.|||:.||:|.:|||.||||:||:||.:.||:||:..|:|.||.:|||.:::|.|||:|||
  Rat   205 LEDLNMRPDPEPLLTEMIHEAAFRENTVGLHRFCPVENIGKIDREVLHSYLKNYYTPDRMVLAGV 269

  Fly   284 GVDHDELVSHVQRYFVEDKAIWETEALEDSGPKQVDTSIAQYTGGLVKEQCEI--------PIYA 340
            ||:|:.||...::|.:..:..|..     .|...||:|:||||||::|.:.::        ||  
  Rat   270 GVEHEHLVECARKYLLGVQPAWGA-----PGAVDVDSSVAQYTGGIIKVERDMSNVSLGPTPI-- 327

  Fly   341 AAGLPELAHVILGFEGCSHQDKDFVPLCVLNIMMGGGGSFSAGGPGKGMYSRLYTKVLNRYHWMY 405
                |||.|:::|.|.||..::||:|..|||:|||||||||||||||||:||||..||||:||||
  Rat   328 ----PELTHIMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMY 388

  Fly   406 SATAYNHAYGDCGLFCVHGSAPPQHMNDMVEVLTREMMGMAAEPGREELMRSKIQLQSMLLMNLE 470
            :||:|:|:|.|.||.|:|.||.|:.:.:|||::|:|.:.|.......||.|:|.||.|||:||||
  Rat   389 NATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGRTVDLVELERAKTQLMSMLMMNLE 453

  Fly   471 SRPVVFEDVGRQVLVTGQRKRPQHFIKEIESVTAADIQRVAQRLLSSPPSVAARGDIHNLPEMSH 535
            ||||:|||||||||.|..||.|......|.:|...||:|||.::|...|:|||.||:.:||...|
  Rat   454 SRPVIFEDVGRQVLATHSRKLPHELCTLIRNVKPEDIKRVASKMLRGKPAVAALGDLTDLPTYEH 518

  Fly   536 ITNAVSG-SGRTGLGRRLSLFK 556
            |..|:|. .||  |.|...||:
  Rat   519 IQAALSSRDGR--LPRTYRLFR 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8728NP_610333.1 PqqL 76..532 CDD:223685 247/464 (53%)
Peptidase_M16 104..253 CDD:279066 89/148 (60%)
Peptidase_M16_C 259..461 CDD:282978 100/209 (48%)
PmpcaXP_038960652.1 PqqL 78..517 CDD:223685 244/449 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350689
Domainoid 1 1.000 196 1.000 Domainoid score I3038
eggNOG 1 0.900 - - E1_COG0612
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6078
Inparanoid 1 1.050 479 1.000 Inparanoid score I1416
OMA 1 1.010 - - QHG53769
OrthoDB 1 1.010 - - D427789at33208
OrthoFinder 1 1.000 - - FOG0003938
OrthoInspector 1 1.000 - - oto96522
orthoMCL 1 0.900 - - OOG6_102381
Panther 1 1.100 - - LDO PTHR11851
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2236
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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