Sequence 1: | NP_477436.1 | Gene: | drosha / 35747 | FlyBaseID: | FBgn0026722 | Length: | 1327 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_008763126.1 | Gene: | Dicer1 / 299284 | RGDID: | 1309381 | Length: | 1918 | Species: | Rattus norvegicus |
Alignment Length: | 1646 | Identity: | 292/1646 - (17%) |
---|---|---|---|
Similarity: | 481/1646 - (29%) | Gaps: | 706/1646 - (42%) |
- Green bases have known domain annotations that are detailed below.
Fly 131 PSERQRYTS----NSSSQGYHHYPGYSSGRRYEQRHDQEHRQIQDS------------------- 172
Fly 173 ----RYA-------------HEPRHGHYAHRQAKGSQHGYYGSAARNQVSDDYSPRGHHE----R 216
Fly 217 ERNETLEKTRAKPKVETERDRLLRQWCSNFCEKPEDYVKKMNALSEADAPVE--SWVRSSPAELY 279
Fly 280 YERTKSENEVRGRAR--LQKLCTLFDEELLQRAKRVREKLPVYVPPPRKARRRVCKHKHKSEACS 342
Fly 343 SSSSSDDD--------SDEDAFKIEQDCCMEELSRKVQHPQRVHADLWHNDAGEMNDGPLCRCSA 399
Fly 400 KSRRIGIRHGIYPGETGYK-------------------------------LCDPNSNNAGKLFHY 433
Fly 434 RISISPPTNFLTKTPTIIKHDEHEFLFEG------------------------------------ 462
Fly 463 ---------------------------FSLLSHVRLSDLPVCKVIRFNIEYTIEYEEEKMPENFT 500
Fly 501 IHE--LDI---FFKYLFHELLEL-------------------------------VDFNLMPN--- 526
Fly 527 ------LPSGNVEESCPAFHF----------FPR----------FVRDL----------PDNGKE 555
Fly 556 VLAMVEVLRYLLD----NSAQL-----VERQQLL---HLNQISQSEWQNYVDFIKGMLVTKPGYK 608
Fly 609 PCSLRVDQLDRNNSDLPE-CVDRETGISHP---AIVHFGICHPQLSY-------AGNPEYQKAWR 662
Fly 663 EYVKYRHLMANMSKPS--FKDKRKLEEK------EQRLQEMRTQGRMKRNITVA----------- 708
Fly 709 ISSEGFYRTGIMCDVV----------QHAMLIPVLTGHLRFHKSL-----DLLE------ESIGY 752
Fly 753 RFKNRYLLQLALTHPSYK-ENYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNT--------RKRG 808
Fly 809 INTLVSIMSRFGKEHE---------------------TVSNITHN---ERLEFLGDAVVEFLSSI 849
Fly 850 HLFFMFPELEEGGLATYRAAIVQNQHLALLAKK-------------------------------- 882
Fly 883 -----------------------------------------------------LQLEEFMLYAHG 894
Fly 895 -------------SDLCHELEL------------------------------------------- 903
Fly 904 -----------------------------RHAMANCFEALMGALLLDGGIKVADEVFTDALFRQD 939
Fly 940 EKLLSIWK----NLPEHPLQE------QEPLG----------------DRSCI-----------D 967
Fly 968 SYRVLKEL----TKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSE 1028
Fly 1029 YLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPK------------------- 1074
Fly 1075 ---ADLK--------------TKDRADLLEAFLGALYVDKGL-------LYCEQFCHVCLFPRLQ 1115
Fly 1116 LFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVEASGPTNTRVY----KVAVYFRSKRLA 1176
Fly 1177 TSSGSSIQQAEMNAAKQALEN 1197 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
drosha | NP_477436.1 | DLL_N | 64..136 | CDD:289198 | 3/4 (75%) |
Rnc | 738..>974 | CDD:223644 | 71/486 (15%) | ||
RIBOc | 826..942 | CDD:197778 | 40/288 (14%) | ||
rnc | 973..1196 | CDD:234633 | 68/273 (25%) | ||
RIBOc | 990..1117 | CDD:197778 | 42/169 (25%) | ||
DSRM | 1125..1196 | CDD:238007 | 18/74 (24%) | ||
Dicer1 | XP_008763126.1 | DEXHc_dicer | 42..239 | CDD:350792 | |
Dicer_PBD | 271..365 | CDD:277191 | |||
SF2_C_dicer | 372..564 | CDD:350189 | 43/218 (20%) | ||
Dicer_dimer | 630..718 | CDD:397444 | 14/107 (13%) | ||
PAZ_dicer_like | 886..1008 | CDD:239209 | 27/135 (20%) | ||
RIBOc | 1296..>1387 | CDD:197778 | 23/90 (26%) | ||
RIBOc | 1678..1842 | CDD:238333 | 43/173 (25%) | ||
DSRM_DICER | 1847..1909 | CDD:380680 | 18/75 (24%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0571 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |