DRSC/TRiP Functional Genomics Resources

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Protein Alignment rnh1 and rnhA

DIOPT Version :10

Sequence 1:NP_477315.1 Gene:rnh1 / 35746 FlyBaseID:FBgn0023171 Length:333 Species:Drosophila melanogaster
Sequence 2:NP_414750.1 Gene:rnhA / 946955 ECOCYCID:EG10860 Length:155 Species:Escherichia coli


Alignment Length:147 Identity:59/147 - (40%)
Similarity:83/147 - (56%) Gaps:19/147 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 VIVYTDGSCIGNGRAGACAGYGV---YFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKTALDLG 243
            |.::|||||:||...|   |||.   |.|:....:|...   |.|||..|:.|||.|::     .
E. coli     5 VEIFTDGSCLGNPGPG---GYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALE-----A 58

  Fly   244 IQKLC---ISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQENNITVKWNYV 305
            :::.|   :|||||::...||.|:..||||.||..:.:|||||..::.||..|.::.|  ||.:|
E. coli    59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI--KWEWV 121

  Fly   306 EAHKGIEGNEMADKLAR 322
            :.|.|...||..|:|||
E. coli   122 KGHAGHPENERCDELAR 138

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnh1NP_477315.1 Cauli_VI 18..60 CDD:460297
RNase_HI_eukaryote_like 183..326 CDD:260012 58/146 (40%)
rnhANP_414750.1 rnhA 2..151 CDD:178927 59/147 (40%)
Blue background indicates that the domain is not in the aligned region.

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