Protein Alignment rnh1 and rnaseh1

DIOPT Version :10

• Sequence 1: NP_477315.1
• Gene: rnh1 / 35746
• FlyBaseID: FBgn0023171
• Length: 333
• Species: Drosophila melanogaster
• Sequence 2: NP_001002659.2
• Gene: rnaseh1 / 436932
• ZFINID: ZDB-GENE-040718-407
• Length: 297
• Species: Danio rerio
• Alignment Length: 323
• Identity: 113/323 - (34%)
• Similarity: 155/323 - (47%)
• Gaps: 72/323 - (22%)

  Fly    18 FYAVASGRRSGVYGSWAECEEQVKGFKNAKYKKFKTRQEADQFV------------NGCKSYAPQ 70
            ||||..|.:.|||.:|.||:.||..|.:|.:|||.:.|:|..||            |||:.....
Zfish    29 FYAVRKGFKPGVYQTWEECKHQVDKFPSASFKKFASEQDALDFVRSHSDASSSAGANGCELEVLP 93

  Fly    71 DVAVPLGKEKASLASWKNSIEVNKNPKYTDEWPEEDHDLAEDDLNAAMNEVEGD--PKPSNSSNL 133
            ...||......|..|                  :..||..||         ||.  ||......:
Zfish    94 PRNVPCSSMAVSFGS------------------KRTHDETED---------EGPSCPKRVKLIEV 131

  Fly   134 PDILNRKRKGTTSGDKRNKIPRHASQVSEATGLKQVGAFQFEIDAEGYVIVYTDGSCIGNGRAGA 198
            |    :.:.||||.|                      .|.:..||   |:|||||.|.|||:.||
Zfish   132 P----QPKTGTTSSD----------------------GFTYMGDA---VVVYTDGCCSGNGKHGA 167

  Fly   199 CAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKTALDLGIQKLCISTDSQFLINSITLW 263
            .||.|||:|::|..|.|:.:.||.||...|:|||..|::.|.::..:|:.:.|||:|.||.:|.|
Zfish   168 RAGIGVYWGRDHPRNVAERLPGRQTNQRAELQAACKALEQAKEMNFKKVVLYTDSKFTINGVTSW 232

  Fly   264 VAGWKKRDWKLKNNQPVKNVVDFKELDKLLQENNITVKWNYVEAHKGIEGNEMADKLARQGSA 326
            |..||...|:||:...:.|..||::||||..|  :.|.|.::..|.|..|||.||:|:|:|:|
Zfish   233 VKTWKSNGWRLKSGGVIINKDDFQQLDKLNAE--LDVVWMHIPGHAGYTGNEEADRLSREGAA 293

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rnh1	NP_477315.1	Cauli_VI	18..60	CDD:460297	20/41 (49%)
		RNase_HI_eukaryote_like	183..326	CDD:260012	65/142 (46%)
rnaseh1	NP_001002659.2	Cauli_VI	29..71	CDD:460297	20/41 (49%)
		RNase_HI_eukaryote_like	152..293	CDD:260012	65/142 (46%)