DRSC/TRiP Functional Genomics Resources

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Protein Alignment rnh1 and rnh-1.0

DIOPT Version :9

Sequence 1:NP_477315.1 Gene:rnh1 / 35746 FlyBaseID:FBgn0023171 Length:333 Species:Drosophila melanogaster
Sequence 2:NP_001040786.1 Gene:rnh-1.0 / 3565940 WormBaseID:WBGene00004382 Length:251 Species:Caenorhabditis elegans


Alignment Length:317 Identity:101/317 - (31%)
Similarity:151/317 - (47%) Gaps:74/317 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 FYAVASGRRSGVYGSWAECEEQVKGFKNAKYKKFKTRQEADQFVNGCKSYAPQDVAVPLGKEKAS 82
            :||||.|::.|:|.:|.||:.|:.||:||::|||.|..||.:||       ..:::||..|... 
 Worm     7 YYAVARGKQVGIYRTWNECKTQIDGFQNARFKKFATEAEARKFV-------ADNMSVPGSKPVT- 63

  Fly    83 LASWKNSIEVNKNPKYTDEWPEEDHDLAEDDLNAAMNEVEGDPKPSNSSNLPDILNRKRKGTTSG 147
                                                      |..|.||       ..||.|..|
 Worm    64 ------------------------------------------PAVSTSS-------ATRKRTHEG 79

  Fly   148 DKRNKIPRHASQVSEATGLKQVGAFQFEIDAE--GYVIVYTDGSCIGNGRAGACAGYGVYFGKNH 210
            .|             .|..|::...:..||.|  ...:|||||:|..||...|.||:|||:|.:.
 Worm    80 TK-------------FTEAKKMKTEEEVIDPEFANAPVVYTDGACSSNGTKNAKAGWGVYWGDDS 131

  Fly   211 QLNAAKPVEGRVTNNVGEIQAAIHAIKTALDLGIQKLCISTDSQFLINSITLWVAGWKKRDWKLK 275
            :.|...||.|..|||.||:.|...||:.|::..:.|:.|.|||..|:.|:.:|:.|||::.||..
 Worm   132 EDNEFGPVYGAPTNNRGELIAVQKAIEKAIEKRLPKVVIKTDSNLLVQSMNIWIHGWKRKGWKTS 196

  Fly   276 NNQPVKNVVDFKELDKLLQENNITVKWNYVEAHKGIEGNEMADKLARQGSALYKQKN 332
            ....|.|.....::|.|.|:  :.||:.:|..|.||:|||.||:|||:|:.::.:::
 Worm   197 TGSEVLNQDVLMKIDNLRQK--LKVKFLHVRGHAGIDGNEKADELARKGAQMFIKRS 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnh1NP_477315.1 Cauli_VI 19..60 CDD:279957 21/40 (53%)
RNase_HI_eukaryote_like 183..326 CDD:260012 61/142 (43%)
rnh-1.0NP_001040786.1 Rnh1 1..226 CDD:225878 89/290 (31%)
Cauli_VI 8..49 CDD:279957 21/40 (53%)
RNase_HI_eukaryote_like 104..245 CDD:260012 61/142 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166756
Domainoid 1 1.000 123 1.000 Domainoid score I3470
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2202
Inparanoid 1 1.050 182 1.000 Inparanoid score I2643
Isobase 1 0.950 - 0 Normalized mean entropy S2771
OMA 1 1.010 - - QHG63618
OrthoDB 1 1.010 - - D1434144at2759
OrthoFinder 1 1.000 - - FOG0003232
OrthoInspector 1 1.000 - - oto19170
orthoMCL 1 0.900 - - OOG6_101549
Panther 1 1.100 - - LDO PTHR10642
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1165
SonicParanoid 1 1.000 - - X3158
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.890

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