DRSC/TRiP Functional Genomics Resources

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Protein Alignment rnh1 and Rnaseh1

DIOPT Version :9

Sequence 1:NP_477315.1 Gene:rnh1 / 35746 FlyBaseID:FBgn0023171 Length:333 Species:Drosophila melanogaster
Sequence 2:NP_001013115.1 Gene:Rnaseh1 / 298933 RGDID:1309012 Length:285 Species:Rattus norvegicus


Alignment Length:316 Identity:116/316 - (36%)
Similarity:151/316 - (47%) Gaps:58/316 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 FYAVASGRRSGVYGSWAECEEQVKGFKNAKYKKFKTRQEADQFVNGCKSYAPQDVAVPLGKEKAS 82
            ||||..|||:||:.||:||:.||..|..|::|||.|..||..||.  .|.:|..   ..|:|.|.
  Rat    28 FYAVRRGRRTGVFLSWSECKAQVDRFPAARFKKFATEDEAWAFVR--SSSSPDG---SKGQESAH 87

  Fly    83 LASWKNSIEVNKNPKYTDEWPEEDHDLAEDDLNAAMNEVEGDPKPSNSSNLPDILNRKRKGTTSG 147
            :.  |..::.:|.|:                  ..:.|.|..|:|.                   
  Rat    88 VQ--KLQVKTSKRPR------------------EPLGEEEEPPEPG------------------- 113

  Fly   148 DKRNKIPRHASQVSEATGLKQVGAFQFEIDAEGYVIVYTDGSCIGNGRAGACAGYGVYFGKNHQL 212
                  .:|..|.:|...|....||.:..::   |:|||||.|..|||..|.||.|||:|..|.|
  Rat   114 ------AKHTRQDTEPAALVSKDAFSYMGES---VVVYTDGCCSSNGRKRARAGIGVYWGPGHPL 169

  Fly   213 NAAKPVEGRVTNNVGEIQAAIHAIKTALDLGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNN 277
            |....:.||.||...||.||..||..|....|.||.:.|||.|.||.||.||.||||..|:....
  Rat   170 NVGIRLPGRQTNQRAEIHAACKAITQAKAQNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTG 234

  Fly   278 QPVKNVVDFKELDKLLQENNITVKWNYVEAHKGIEGNEMADKLARQGSALYKQKNG 333
            :.|.|..||.|||:|.|  .:.::|.::..|.|..|||.||:|||:|:   ||..|
  Rat   235 KDVINKEDFMELDELTQ--GMDIQWMHIPGHSGFVGNEEADRLAREGA---KQSEG 285

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnh1NP_477315.1 Cauli_VI 19..60 CDD:279957 22/40 (55%)
RNase_HI_eukaryote_like 183..326 CDD:260012 69/142 (49%)
Rnaseh1NP_001013115.1 Cauli_VI 29..70 CDD:279957 22/40 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 72..122 14/99 (14%)
RNase_HI_eukaryote_like 140..281 CDD:260012 69/145 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353208
Domainoid 1 1.000 135 1.000 Domainoid score I4861
eggNOG 1 0.900 - - E1_COG0328
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2202
Inparanoid 1 1.050 173 1.000 Inparanoid score I4002
OMA 1 1.010 - - QHG63618
OrthoDB 1 1.010 - - D1434144at2759
OrthoFinder 1 1.000 - - FOG0003232
OrthoInspector 1 1.000 - - oto96422
orthoMCL 1 0.900 - - OOG6_101549
Panther 1 1.100 - - LDO PTHR10642
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3158
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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