Protein Alignment rnh1 and Rnaseh1

DIOPT Version :10

• Sequence 1: NP_477315.1
• Gene: rnh1 / 35746
• FlyBaseID: FBgn0023171
• Length: 333
• Species: Drosophila melanogaster
• Sequence 2: NP_001013115.1
• Gene: Rnaseh1 / 298933
• RGDID: 1309012
• Length: 285
• Species: Rattus norvegicus
• Alignment Length: 316
• Identity: 116/316 - (36%)
• Similarity: 151/316 - (47%)
• Gaps: 58/316 - (18%)

  Fly    18 FYAVASGRRSGVYGSWAECEEQVKGFKNAKYKKFKTRQEADQFVNGCKSYAPQDVAVPLGKEKAS 82
            ||||..|||:||:.||:||:.||..|..|::|||.|..||..||.  .|.:|..   ..|:|.|.
  Rat    28 FYAVRRGRRTGVFLSWSECKAQVDRFPAARFKKFATEDEAWAFVR--SSSSPDG---SKGQESAH 87

  Fly    83 LASWKNSIEVNKNPKYTDEWPEEDHDLAEDDLNAAMNEVEGDPKPSNSSNLPDILNRKRKGTTSG 147
            :.  |..::.:|.|:                  ..:.|.|..|:|.
  Rat    88 VQ--KLQVKTSKRPR------------------EPLGEEEEPPEPG------------------- 113

  Fly   148 DKRNKIPRHASQVSEATGLKQVGAFQFEIDAEGYVIVYTDGSCIGNGRAGACAGYGVYFGKNHQL 212
                  .:|..|.:|...|....||.:..::   |:|||||.|..|||..|.||.|||:|..|.|
  Rat   114 ------AKHTRQDTEPAALVSKDAFSYMGES---VVVYTDGCCSSNGRKRARAGIGVYWGPGHPL 169

  Fly   213 NAAKPVEGRVTNNVGEIQAAIHAIKTALDLGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNN 277
            |....:.||.||...||.||..||..|....|.||.:.|||.|.||.||.||.||||..|:....
  Rat   170 NVGIRLPGRQTNQRAEIHAACKAITQAKAQNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTG 234

  Fly   278 QPVKNVVDFKELDKLLQENNITVKWNYVEAHKGIEGNEMADKLARQGSALYKQKNG 333
            :.|.|..||.|||:|.|  .:.::|.::..|.|..|||.||:|||:|:   ||..|
  Rat   235 KDVINKEDFMELDELTQ--GMDIQWMHIPGHSGFVGNEEADRLAREGA---KQSEG 285

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rnh1	NP_477315.1	Cauli_VI	18..60	CDD:460297	23/41 (56%)
		RNase_HI_eukaryote_like	183..326	CDD:260012	69/142 (49%)
Rnaseh1	NP_001013115.1	Cauli_VI	28..70	CDD:460297	23/41 (56%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	72..122		14/99 (14%)
		RNase_HI_eukaryote_like	140..281	CDD:260012	69/145 (48%)