DRSC/TRiP Functional Genomics Resources

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Protein Alignment rnh1 and rnh-1.2

DIOPT Version :10

Sequence 1:NP_477315.1 Gene:rnh1 / 35746 FlyBaseID:FBgn0023171 Length:333 Species:Drosophila melanogaster
Sequence 2:NP_496121.2 Gene:rnh-1.2 / 191471 WormBaseID:WBGene00014163 Length:192 Species:Caenorhabditis elegans


Alignment Length:160 Identity:40/160 - (25%)
Similarity:67/160 - (41%) Gaps:17/160 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 YVIVYTDGSCIGNGRAGACAGYGVYFGKNHQLNAAKPVE-GRVTNNVGEIQAAIHAIKTA----- 239
            |..||||||.:.||:.||..|:.:.|..:..|:....:: |:.||||.|:.|...|.:..     
 Worm     5 YREVYTDGSTVNNGKRGARGGWAIVFPFDRSLDEYDFMKVGKQTNNVYELTAIYEATEVVRCWDS 69

  Fly   240 ------LD-LGIQKLCISTDSQFLINSITLWVAGWKKRDWK----LKNNQPVKNVVDFKELDKLL 293
                  |: :.::.....|.|..||......|:.....|..    |:....:.:.:....:....
 Worm    70 FKCNQKLEFVRLKNTITPTTSSILIPCTRRTVSPNGSTDGTNMGGLRITPGILSKISRSFVPSTA 134

  Fly   294 QENNITVKWNYVEAHKGIEGNEMADKLARQ 323
            ...::.||..||:.|.....|..||:||::
 Worm   135 ISESLDVKIEYVKGHHTNFFNCEADRLAKK 164

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnh1NP_477315.1 Cauli_VI 18..60 CDD:460297
RNase_HI_eukaryote_like 183..326 CDD:260012 39/158 (25%)
rnh-1.2NP_496121.2 RNase_H_like 8..167 CDD:449355 39/157 (25%)
Blue background indicates that the domain is not in the aligned region.

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