DRSC/TRiP Functional Genomics Resources

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Protein Alignment rnh1 and rnh-1.3

DIOPT Version :10

Sequence 1:NP_477315.1 Gene:rnh1 / 35746 FlyBaseID:FBgn0023171 Length:333 Species:Drosophila melanogaster
Sequence 2:NP_492581.1 Gene:rnh-1.3 / 182229 WormBaseID:WBGene00007303 Length:139 Species:Caenorhabditis elegans


Alignment Length:128 Identity:44/128 - (34%)
Similarity:69/128 - (53%) Gaps:4/128 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 YTDGSCIGNGRAGACAGYGVYFGKNHQLNAAKPV-EGRVTNNVGEIQAAIHAIKTALDLGIQKLC 248
            |||||.:|||:.|:..||||:...:...|.:... .|..|||..|::|..||.:.|.|:....:.
 Worm     6 YTDGSALGNGQQGSRGGYGVHVPSDTSKNVSGSYPHGPQTNNRYELEAIKHATQMARDVPDSHVR 70

  Fly   249 ISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDK---LLQENNITVKWNYVEAH 308
            |.|||:...:|:|.|...||...:|..:.|.|||....:::|:   .|:.:..||::.:|..|
 Worm    71 IHTDSKNAKDSVTKWNDNWKSNGYKTSSGQDVKNQDLIRDIDRNVQALKHSGKTVEFEHVRGH 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnh1NP_477315.1 Cauli_VI 18..60 CDD:460297
RNase_HI_eukaryote_like 183..326 CDD:260012 44/128 (34%)
rnh-1.3NP_492581.1 RNase_HI_eukaryote_like 6..135 CDD:260012 44/128 (34%)
Blue background indicates that the domain is not in the aligned region.

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