Protein Alignment rnh1 and rnh-1.1

DIOPT Version :9

• Sequence 1: NP_477315.1
• Gene: rnh1 / 35746
• FlyBaseID: FBgn0023171
• Length: 333
• Species: Drosophila melanogaster
• Sequence 2: NP_001022508.1
• Gene: rnh-1.1 / 174222
• WormBaseID: WBGene00022888
• Length: 507
• Species: Caenorhabditis elegans
• Alignment Length: 337
• Identity: 76/337 - (22%)
• Similarity: 136/337 - (40%)
• Gaps: 81/337 - (24%)

  Fly    23 SGRRSGVYGSWAECEEQVKGFKNAKYKKF------------KTRQEADQFVNGCKSYAPQ----D 71
            |.|:||..........|::...:...||:            ::|..:....|...:...|    .
 Worm   180 SSRKSGSRQDSVASRRQLRSVSSKPQKKYVATDMPSTVSTGRSRGRSVYRRNNVNADVSQRQSRS 244

  Fly    72 VAVPLGKEKASLASWKNSIEVNKNPKYTDEWPEEDHDLAEDDLNAAMNEVEGDPKPSNSSNLPDI 136
            ::|..|:.:....:.:.|..:.|:.:       ..|...:|..|:  ::|......|.|.:....
 Worm   245 MSVSRGRSRNRSQNRERSPSIEKSTR-------SQHVSRKDAFNS--HDVLSPTNRSGSVHRSHS 300

  Fly   137 LNRKRKGTTSGDKRNKIPRHASQVSEATGLKQVGAFQFEIDAEGYVIVYTDGSCIGNGRAGACAG 201
            .:.:|    :.::|:|.|.              |.:. |:..:|.:::|||||.:   :....:|
 Worm   301 AHHER----TFEERHKTPN--------------GVWN-EMFPKGTLVMYTDGSYL---KRPPTSG 343

  Fly   202 YGVYFGKNHQLNAAKPVEGRV-TNNVGEIQAAIHAIKTAL---DLGIQKLCISTDSQFLINSITL 262
            .|::.|..|:||.::.:.|.: .||..|..|...|::.||   :...||:.|.||...:|.:
 Worm   344 IGIFVGPGHELNRSQRIRGPIQDNNYAEFIAVRTALQNALKNENYRDQKVVIRTDCLNVIEA--- 405

  Fly   263 WVAGWKKRDWKLKNNQP-----VKNVVDF--KELDKLLQENNITVKWNYVEAHKGIEGNEMADKL 320
                       |:..:|     ||:.|:|  |:..|       .|.:.:|.||.|..||||||..
 Worm   406 -----------LQGTRPTAFVDVKSQVEFLSKQFPK-------GVHFQHVYAHAGDPGNEMADLF 452

  Fly   321 ARQGSALYKQKN 332
            |.|.|:  |.:|
 Worm   453 AGQASS--KSQN 462

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rnh1	NP_477315.1	Cauli_VI	19..60	CDD:279957	8/48 (17%)
		RNase_HI_eukaryote_like	183..326	CDD:260012	46/153 (30%)
rnh-1.1	NP_001022508.1	RNase_HI_eukaryote_like	328..457	CDD:260012	46/152 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0328
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	1	0.950	-	0	Normalized mean entropy	S2771
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR10642
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	4	3.860