DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4A and KDM4A

DIOPT Version :10

Sequence 1:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_055478.2 Gene:KDM4A / 9682 HGNCID:22978 Length:1064 Species:Homo sapiens


Alignment Length:506 Identity:248/506 - (49%)
Similarity:334/506 - (66%) Gaps:55/506 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 EEQNKVPRIMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAKIQPPAEWVPRKSGYDIDNINMTIP 74
            |..|...|||||.|:.|||:|||.||.||||:|||.|||||:.||.||.||.|..|||  ::.||
Human     6 ETLNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDID--DLVIP 68

  Fly    75 APICQVVTGAHGVYQQINIQQRRQMTLRQFMEKANSELHQTPRHFDYDDLERKYWKNITYISPLY 139
            |||.|:|||..|::.|.|| |::.||:|:|.:.|||:.:.|||:.::::||||||||:|:..|:|
Human    69 APIQQLVTGQSGLFTQYNI-QKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNPPIY 132

  Fly   140 AADVKGSLSDEDLDVWNIGRLDTILNLVNTDYNIIIDGVNTAYLYFGMWKSSFAWHTEDMDLYSI 204
            .|||.|:|.::.:|.||||||.|||:||..:..|.|:||||.||||||||:||||||||||||||
Human   133 GADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSI 197

  Fly   205 NYLHFGAPKTWYAIPPAYGRRLEKLANETFSENYQECNAYLRHKMTMISPKVLRQHNIPYNKITQ 269
            ||||||.||:||::||.:|:|||:||...|..:.|.|.|:||||||:|||.:|:::.||::|:||
Human   198 NYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQ 262

  Fly   270 EAGEIMITFPFGYHAGFNHGFNGAESTNFASKRWIEYGKRASICRCRSDMVKISMETFVRRFQPE 334
            ||||.|||||:|||||||||||.|||||||::|||||||:|.:|.||.|||||||:.|||:||||
Human   263 EAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRKFQPE 327

  Fly   335 RYDNWLKGQDMGCHPEEPGKICAAAP-PTLNEYEKQENL-RAAKSEEESPQKRGCSLAGNGCERN 397
            ||..|..|:|...       |....| |...|:.|:..| ..|.:|||.|::   .:.|      
Human   328 RYKLWKAGKDNTV-------IDHTLPTPEAAEFLKESELPPRAGNEEECPEE---DMEG------ 376

  Fly   398 AESAEDVDDKASVSS-------YSSCRQLQPVVKLRKLPTIASVPEPSSAPKRYDFNTE-----A 450
            .|..|:.|.|.|::.       :..|.::...|...:|     .|:...:.::|:. ||     |
Human   377 VEDGEEGDLKTSLAKHRIGTKRHRVCLEIPQEVSQSEL-----FPKEDLSSEQYEM-TECPAALA 435

  Fly   451 VVR-----VKRLWNELPCPDRGANLLTNGVVKNTKRMRF-QTKVLTLDDED 495
            .||     |:::.:.|..||          ..::..::| :.|.:.|::||
Human   436 PVRPTHSSVRQVEDGLTFPD----------YSDSTEVKFEELKNVKLEEED 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4ANP_610331.1 JmjN 17..59 CDD:472837 30/41 (73%)
JmjC 182..298 CDD:396791 83/115 (72%)
KDM4ANP_055478.2 JmjN 13..55 CDD:128818 30/41 (73%)
JmjC 175..291 CDD:396791 83/115 (72%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 358..384 9/34 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 501..537
Interaction with NCOR1. /evidence=ECO:0000269|PubMed:16024779 597..638
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 616..641
PHD_JMJD2A 667..766 CDD:277050
ePHD_JMJD2A 775..884 CDD:277183
Tudor_JMJD2A_rpt1 899..953 CDD:410534
Tudor_JMJD2A_rpt2 956..1011 CDD:410537
Blue background indicates that the domain is not in the aligned region.

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