DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kdm4A and AT5G46910

DIOPT Version :10

Sequence 1:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_199502.2 Gene:AT5G46910 / 834736 AraportID:AT5G46910 Length:787 Species:Arabidopsis thaliana


Alignment Length:642 Identity:154/642 - (23%)
Similarity:233/642 - (36%) Gaps:219/642 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 KVPRIMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAKIQPPAEWVPRKSGYDIDNINMTIPAPIC 78
            ::|....:||:.|||::...|::.|... |...|:.||..|              :..|:||   
plant    99 RLPECPVYRPTKEEFEDPLTYLQKIFPE-ASKYGICKIVSP--------------LTATVPA--- 145

  Fly    79 QVVTGAHGVYQQINIQ-----------------------QRRQMTLRQFMEKANSELHQ------ 114
                ||..:.::.|.:                       ..|..|.|.:.:.||....:      
plant   146 ----GAVLMKEKSNFKFTTRVQPLRLAEWDSDDKVTFFMSGRTYTFRDYEKMANKVFARRYCSGG 206

  Fly   115 -TPRHFDYDDLERKYWKNIT---YISPLYAADVKGS-LSDEDLD-----VWNIGRLDTI----LN 165
             .|..|    ||:::||.|.   ..:..||.||.|| .|....|     .||:.::..:    |.
plant   207 SLPDSF----LEKEFWKEIACGKTETVEYACDVDGSAFSSAPGDPLGSSKWNLNKVSRLPKSTLR 267

  Fly   166 LVNTDYNIIIDGVNTAYLYFGMWKSSFAWHTEDMDLYSINYLHFGAPKTWYAIPPAYGRRLEKLA 230
            |:.|.    |.||....||.||..|.||||.||..||||||.|.||.||||.||.:...:.||:.
plant   268 LLETS----IPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGSAALKFEKVV 328

  Fly   231 NE-TFSENYQECNA------YLRHKMTMISPKVLRQHNIPYNKITQEAGEIMITFPFGYHAGFNH 288
            .| .::::....|.      .|..|.|:..||.|..||:|..|..|:.||.::|||..|||||:|
plant   329 KECVYNDDILSTNGEDGAFDVLLGKTTIFPPKTLLDHNVPVYKAVQKPGEFVVTFPRAYHAGFSH 393

  Fly   289 GFNGAESTNFASKRWIEYGKRASICRCR-SDMVKISMETFVRRFQPERYDNWLKGQDMGCHPEEP 352
            |||..|:.|||...|..:|   :|..|| :.:.::.:               |..:::       
plant   394 GFNCGEAVNFAMGDWFPFG---AIASCRYAHLNRVPL---------------LPHEEL------- 433

  Fly   353 GKICAAAPPTLNEYEKQENLRAAKSEEESPQ---------------------------------- 383
              ||..| ..||...|.|||....:|....:                                  
plant   434 --ICKEA-MLLNSSSKSENLDLTPTELSGQRSIKTAFVHLIRFLHLARWSLMKSGLCTGLVSNTY 495

  Fly   384 --------KRGCSLAGNGCERNAESA----------------------EDVDD-KASVSSYSSCR 417
                    ||.|.||...||..:...                      ::::| :|:...:....
plant   496 GTIVCSLCKRDCYLAFINCECYSHPVCLRHDVKKLDLPCGTTHTLYLRDNIEDMEAAAMKFEKED 560

  Fly   418 QLQPVV----KLRKLPTIASVP---EPSSAPKR---YDFNTEAVVR------------------- 453
            .:..::    .|.|.|:..::|   |....|..   :||.||..:.                   
plant   561 GVSDLITTDEDLYKYPSSITLPAAKEDGYTPYSTIYFDFYTEVEMTSHDQLQSGNPVMSYEANAS 625

  Fly   454 -VKRLWNELPCPD---RGANLLTNGVVK--------NTKRMRF----QTKVLTLDDE 494
             :..:.::..|.|   |.||..::...|        ::|:.||    |.:.|..|.|
plant   626 CISSVADDYECSDYVNRRANCSSSSDSKLSEEVACSSSKKTRFFPVVQDEQLVADQE 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4ANP_610331.1 JmjN 17..59 CDD:472837 12/41 (29%)
JmjC 182..298 CDD:396791 56/122 (46%)
AT5G46910NP_199502.2 JmjN 104..136 CDD:460542 10/32 (31%)
JmjC 280..403 CDD:396791 56/122 (46%)
zf-C5HC2 500..552 CDD:460750 8/51 (16%)

Return to query results.
Submit another query.