DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4A and brd1a

DIOPT Version :9

Sequence 1:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster
Sequence 2:XP_021327219.1 Gene:brd1a / 569574 ZFINID:ZDB-GENE-041008-168 Length:1142 Species:Danio rerio


Alignment Length:516 Identity:97/516 - (18%)
Similarity:152/516 - (29%) Gaps:208/516 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 HGVYQQINIQQRRQMTLRQFMEKANSELHQTPRHFDYDDLERKYWKNITYISPLYAADVKGSLSD 149
            |.|...:.:...|..|..::.:|...||.|   ..:||                        :.:
Zfish   105 HTVDYNLPVIPSRPSTYYKYKQKTVEELDQ---EVEYD------------------------MDE 142

  Fly   150 ED---LDVWNIGRLDTILNLVN------------------------------------------- 168
            ||   ||:.|..|.|..||||:                                           
Zfish   143 EDFAWLDLVNEKRKDEGLNLVSFDDFEFLLDRFEKESFLESQGQHTLQSIDDEDAVCCICMDGDC 207

  Fly   169 TDYNIII--DGVNTA---------YLYFGMWKSSFAWH--------------------TEDMDLY 202
            .|.|:|:  |..|.|         |:..|.|......|                    ||| |.:
Zfish   208 MDSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRHCLHSPTQPANCILCPNKGGAVKQTED-DRW 271

  Fly   203 SINYLHFGAPKTWYA-------------IPPAYGRRLEKLANETFSENYQEC---NAY------- 244
            .........|:..::             ||||..:....|..|.......:|   |.|       
Zfish   272 GHVVCALWVPEVGFSNTVFIEPIDGVSNIPPARWKLTCYLCKEKGVGACIQCHKANCYTAFHVSC 336

  Fly   245 -----LRHKMTMISPKVLRQHNIPYNKITQEAGEIMITFPFGYHAGFNHGFNGAESTNFASKRWI 304
                 |..||..|  |||....||...:.:.|                  :.||.:.|.:.||.:
Zfish   337 AQKSGLFMKMEPI--KVLTDSGIPTFSVKKTA------------------YCGAHTPNGSVKRPL 381

  Fly   305 --------EYGKRASICRC---RSDMVKISMETFVRRFQPERYDNWLKGQDMGCHPEEPGKICAA 358
                    .||    :|:.   :|..:..:.:..:::                  .||  .|...
Zfish   382 AIYKDNETNYG----LCQLVDRKSSRIGFNKQKRLKK------------------NEE--AIVTT 422

  Fly   359 APPTLNEYEKQENLRAAKSEEESPQKRGCSLAGNGCERNAESAEDVDDKASVSSYSSCRQLQPVV 423
            .||.        ::.:..||..||.....||     ::.....|.|     :|.::..||.:..|
Zfish   423 IPPL--------SVPSFSSERLSPILNQVSL-----QKKTAFGELV-----LSYWTLKRQSRNGV 469

  Fly   424 KL-RKLPTIASVPEPSSAPKRYDFNTEAVVRVKRLWNELPCPDRGANLLTNGVVKNTKRMR 483
            .| |:|.|....|: :|..|:.:..|:|:....:.|::|......|.:|...:.|..|..|
Zfish   470 PLNRRLQTRLHPPK-NSQRKQTEEETQALKEQLKEWHQLRHDLERARILLELIRKREKLKR 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4ANP_610331.1 JmjN 17..59 CDD:301729
JmjC 182..298 CDD:202224 30/163 (18%)
brd1aXP_021327219.1 EPL1 83..>555 CDD:331339 97/516 (19%)
Bromo_brd1_like 545..642 CDD:99944
BR140_related 1011..1126 CDD:99900
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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