DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4A and kdm4b

DIOPT Version :10

Sequence 1:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_989064.2 Gene:kdm4b / 394661 XenbaseID:XB-GENE-1012886 Length:1025 Species:Xenopus tropicalis


Alignment Length:379 Identity:215/379 - (56%)
Similarity:283/379 - (74%) Gaps:13/379 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 EQNKVPRIMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAKIQPPAEWVPRKSGYDIDNINMTIPA 75
            :||...:||||||:.||||:|..|:.||||:|||.|||||:.||.||.||::..|:|  .|.|||
 Frog     7 QQNPSCKIMTFRPTLEEFQDFGKYMAYIESQGAHRAGLAKVIPPKEWRPRRTYDDLD--EMVIPA 69

  Fly    76 PICQVVTGAHGVYQQINIQQRRQMTLRQFMEKANSELHQTPRHFDYDDLERKYWKNITYISPLYA 140
            ||.|||||..|::.|.|| |::.||:.::...|||..:.||||.|:||||||||||:|::||:|.
 Frog    70 PIQQVVTGQSGLFTQYNI-QKKPMTVGEYRRLANSNKYCTPRHQDFDDLERKYWKNLTFVSPIYG 133

  Fly   141 ADVKGSLSDEDLDVWNIGRLDTILNLVNTDYNIIIDGVNTAYLYFGMWKSSFAWHTEDMDLYSIN 205
            ||:.|||.|.|:::|||..|:|:|::|..:..|||:||||.||||||||::||||||||||||||
 Frog   134 ADISGSLYDSDINLWNIAGLNTLLDMVEHECGIIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSIN 198

  Fly   206 YLHFGAPKTWYAIPPAYGRRLEKLANETFSENYQECNAYLRHKMTMISPKVLRQHNIPYNKITQE 270
            |||||.||:|||:||.:|:|||:||...|..:.|.|:|:||||||:|||.:|:::.||:::||||
 Frog   199 YLHFGEPKSWYAVPPEHGKRLERLAKGFFPGSSQGCDAFLRHKMTLISPSILKKYGIPFDRITQE 263

  Fly   271 AGEIMITFPFGYHAGFNHGFNGAESTNFASKRWIEYGKRASICRCRSDMVKISMETFVRRFQPER 335
            |||.|||||:|||||||||||.|||||||:.|||.|||.|:.|.||.|||||||:.||:..||:|
 Frog   264 AGEFMITFPYGYHAGFNHGFNCAESTNFATLRWINYGKMATQCTCRKDMVKISMDVFVKFLQPDR 328

  Fly   336 YDNWLKGQDM----GCHPEEPGKICAAAPPTLNEYEKQENLRAAKSEEESPQKR 385
            |:.|.:|:|:    ...|.|      .:.|.|..:.::.|....|::....:||
 Frog   329 YEVWKQGKDITILDHLKPTE------LSSPELEAWRERRNQLKGKTDHRPYRKR 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4ANP_610331.1 JmjN 17..59 CDD:472837 28/41 (68%)
JmjC 182..298 CDD:396791 83/115 (72%)
kdm4bNP_989064.2 JmjN 14..55 CDD:128818 28/40 (70%)
JmjC 175..291 CDD:396791 83/115 (72%)
PHD_JMJD2B 624..719 CDD:277051
ePHD_JMJD2B 728..837 CDD:277184
Tudor_JMJD2B_rpt1 850..903 CDD:410535
Tudor_JMJD2B_rpt2 907..962 CDD:410538
Blue background indicates that the domain is not in the aligned region.

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