DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4A and Kdm4a

DIOPT Version :10

Sequence 1:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_001423737.1 Gene:Kdm4a / 313539 RGDID:1306378 Length:1062 Species:Rattus norvegicus


Alignment Length:504 Identity:247/504 - (49%)
Similarity:327/504 - (64%) Gaps:52/504 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 EEQNKVPRIMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAKIQPPAEWVPRKSGYDIDNINMTIP 74
            |..|...|||||.|:.|||:|||.||.||||:|||.|||||:.||.||.||.|..|||  ::.||
  Rat     6 ETLNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRTSYDDID--DLVIP 68

  Fly    75 APICQVVTGAHGVYQQINIQQRRQMTLRQFMEKANSELHQTPRHFDYDDLERKYWKNITYISPLY 139
            |||.|:|||..|::.|.|| |::.||:|:|.:.|||:.:.|||:.::::||||||||:|:..|:|
  Rat    69 APIQQLVTGQSGLFTQYNI-QKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNPPIY 132

  Fly   140 AADVKGSLSDEDLDVWNIGRLDTILNLVNTDYNIIIDGVNTAYLYFGMWKSSFAWHTEDMDLYSI 204
            .|||.|:|.::.:|.||||||.|||:||..:..|.|:||||.||||||||:||||||||||||||
  Rat   133 GADVNGTLYEQHVDEWNIGRLKTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSI 197

  Fly   205 NYLHFGAPKTWYAIPPAYGRRLEKLANETFSENYQECNAYLRHKMTMISPKVLRQHNIPYNKITQ 269
            ||||||.||:||::||.:|:|||:||...|..:.|.|.|:||||||:|||.:|:::.||::|:||
  Rat   198 NYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQ 262

  Fly   270 EAGEIMITFPFGYHAGFNHGFNGAESTNFASKRWIEYGKRASICRCRSDMVKISMETFVRRFQPE 334
            ||||.|||||:|||||||||||.|||||||::|||||||:|.:|.||.|||||||:.||||||||
  Rat   263 EAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRRFQPE 327

  Fly   335 RYDNWLKGQDMGCHPEEPGKICAAAP-PTLNEYEKQENLRAAKSEEESPQKRGCSLAGNGCERNA 398
            ||..|..|:|...       |....| |...|:.|...|......||.|::.         ...|
  Rat   328 RYKLWKAGKDSTV-------IDHTLPTPEAAEFLKDSGLTPRAGNEECPEED---------SEAA 376

  Fly   399 ESAEDVDDKASVSS-------YSSCRQLQPVVKLRKLPTIASVPEPSSAPKRYDFN----TEAVV 452
            |..|:.|.|.|::.       :..|.::...|...:|     .|:...:..:|:..    |.|.|
  Rat   377 EQGEEGDVKRSLAKHRIGTKRHRVCLEIPQEVSQSEL-----FPKEELSSGQYEMTECQATLAPV 436

  Fly   453 R-----VKRLWNELPCPDRGANLLTNGVVKNTKRMRF-QTKVLTLDDED 495
            |     |:::.:.||.||          ..:...::| :.|.:.|::||
  Rat   437 RPTHSSVRQVEDSLPFPD----------YSDPTEVKFEELKNVKLEEED 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4ANP_610331.1 JmjN 17..59 CDD:472837 30/41 (73%)
JmjC 182..298 CDD:396791 83/115 (72%)
Kdm4aNP_001423737.1 JmjN 13..55 CDD:128818 30/41 (73%)
JmjC 175..291 CDD:396791 83/115 (72%)
PHD_JMJD2A 665..764 CDD:277050
ePHD_JMJD2A 773..882 CDD:277183
Tudor_JMJD2A_rpt1 897..951 CDD:410534
Tudor_JMJD2A_rpt2 954..1009 CDD:410537
Blue background indicates that the domain is not in the aligned region.

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