DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4A and Jade2

DIOPT Version :9

Sequence 1:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster
Sequence 2:XP_038941852.1 Gene:Jade2 / 303113 RGDID:1309152 Length:901 Species:Rattus norvegicus


Alignment Length:112 Identity:25/112 - (22%)
Similarity:41/112 - (36%) Gaps:25/112 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   346 GCHPEEPGKICAAAPPTLNEYEKQENLRAAKSEEESPQKRGCSLAGNGCERNAESAEDVDDKASV 410
            |.|...||   ...|.:|...|..|  ::.|..||..:|...|         :::::..|...:.
  Rat    46 GEHTSPPG---PPVPSSLGGLELAE--QSTKQMEEKRRKYSIS---------SDNSDTTDGHVTS 96

  Fly   411 SSYSSCRQLQPVVKLRKLPTIASVPEPSSAPKRYD--FNTEAVVRVK 455
            :|.|.|         .|||:......|....|:..  |.|:.:..:|
  Rat    97 TSASRC---------SKLPSSTKSGWPRQNEKKPSEVFRTDLITAMK 134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4ANP_610331.1 JmjN 17..59 CDD:301729
JmjC 182..298 CDD:202224
Jade2XP_038941852.1 EPL1 82..247 CDD:402235 13/71 (18%)
COG5141 209..>578 CDD:227470
PHD_SF 326..436 CDD:419867
PHA03247 <676..852 CDD:223021
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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