DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4A and Kdm4c

DIOPT Version :10

Sequence 1:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_001100133.3 Gene:Kdm4c / 298144 RGDID:1307528 Length:1053 Species:Rattus norvegicus


Alignment Length:438 Identity:232/438 - (52%)
Similarity:312/438 - (71%) Gaps:28/438 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 RIMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAKIQPPAEWVPRKSGYDIDNINMTIPAPICQVV 81
            :|||||||.|||:.|:.|:.|:||:|||.|||||:.||.||.||:...|||  |:.|||||.|:|
  Rat    15 KIMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDID--NLLIPAPIQQMV 77

  Fly    82 TGAHGVYQQINIQQRRQMTLRQFMEKANSELHQTPRHFDYDDLERKYWKNITYISPLYAADVKGS 146
            ||..|::.|.|| |::.||:::|.:.|||..:.|||:.||:|||||||||:|:::|:|.||:.||
  Rat    78 TGQSGLFTQYNI-QKKPMTVKEFRQLANSSKYCTPRYLDYEDLERKYWKNLTFVAPIYGADINGS 141

  Fly   147 LSDEDLDVWNIGRLDTILNLVNTDYNIIIDGVNTAYLYFGMWKSSFAWHTEDMDLYSINYLHFGA 211
            :.||.:|.|||.||:|:|::|..:..|.|:||||.||||||||::|||||||||||||||||||.
  Rat   142 IYDEGVDEWNIARLNTVLDVVEEECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGE 206

  Fly   212 PKTWYAIPPAYGRRLEKLANETFSENYQECNAYLRHKMTMISPKVLRQHNIPYNKITQEAGEIMI 276
            ||:||||||.:|:|||:||...|..:.|.|:|:||||||:|||.||:::.||::||||||||.||
  Rat   207 PKSWYAIPPEHGKRLERLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMI 271

  Fly   277 TFPFGYHAGFNHGFNGAESTNFASKRWIEYGKRASICRCRSDMVKISMETFVRRFQPERYDNWLK 341
            |||:|||||||||||.|||||||:.|||:|||.|.:|.||:|||||||:.||::|||:||..|.:
  Rat   272 TFPYGYHAGFNHGFNCAESTNFATVRWIDYGKVAKLCTCRNDMVKISMDIFVKKFQPDRYQIWKQ 336

  Fly   342 GQDMGCHPEEPGKICAAAPPTLNEY-EKQENLRAAKSEEESPQKRGCSLAGN-------GCERNA 398
            |:|:  :..:..|....:.|.:..: ::::.||.|..          ||.||       ..|.:.
  Rat   337 GKDI--YTIDHTKPTPESTPEVKTWLQRRKKLRKAPK----------SLQGNKSLSKRPKAEEDE 389

  Fly   399 ESAEDVDDKASVSSYSSC-RQLQPVVKLR--KLPTIASVPEPSSAPKR 443
            |.||.:.::  |||.:.| |.|:...|..  ||..|.:..|..::..|
  Rat   390 EFAEFIGEE--VSSPAVCPRHLKVTEKPEKFKLANIGASSEKEASDTR 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4ANP_610331.1 JmjN 17..59 CDD:472837 27/41 (66%)
JmjC 182..298 CDD:396791 86/115 (75%)
Kdm4cNP_001100133.3 JmjN 16..57 CDD:472837 27/40 (68%)
JmjC 177..293 CDD:396791 86/115 (75%)
PHD_SF 642..743 CDD:473978
PHD_SF 752..861 CDD:473978
Tudor_JMJD2C_rpt1 876..929 CDD:410536
Tudor_JMJD2C_rpt2 933..992 CDD:410539
Blue background indicates that the domain is not in the aligned region.

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