DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4A and Brpf3

DIOPT Version :9

Sequence 1:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_001074784.1 Gene:Brpf3 / 268936 MGIID:2146836 Length:1204 Species:Mus musculus


Alignment Length:103 Identity:28/103 - (27%)
Similarity:43/103 - (41%) Gaps:16/103 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   342 GQDMGCHPEEPGKICAAAPPTLNEYEKQENLR-----AAKSE-EESPQKRGCSLAGNGCERNAES 400
            |:|.|  ||:.     .|.|...|.|.....|     .:.|| |.|||:...:...||..::.||
Mouse   950 GEDHG--PEDD-----PASPASTEDEHYSRKRPRSRSCSDSEGERSPQQEEETGVTNGFGKHTES 1007

  Fly   401 AEDVDDKASVS---SYSSCRQLQPVVKLRKLPTIASVP 435
            ..|.:....:|   ::.:...|.|..:.|..|.::.||
Mouse  1008 GSDSECSLGLSGGLAFEAGSGLTPPKRSRGKPALSRVP 1045

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4ANP_610331.1 JmjN 17..59 CDD:301729
JmjC 182..298 CDD:202224
Brpf3NP_001074784.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..27
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 76..127
COG5141 117..>603 CDD:227470
ePHD_BRPF3 269..386 CDD:277173
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 393..464
Bromo_brd1_like 592..689 CDD:99944
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 778..879
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 903..1015 21/71 (30%)
BR140_related 1073..1188 CDD:99900
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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