DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4A and jmj3

DIOPT Version :9

Sequence 1:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_595639.1 Gene:jmj3 / 2540780 PomBaseID:SPBC83.07 Length:752 Species:Schizosaccharomyces pombe


Alignment Length:465 Identity:92/465 - (19%)
Similarity:154/465 - (33%) Gaps:165/465 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 IMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAKIQP-------------PAE-----W----VPR 60
            |....|...||.:..::|..:|..|.....:..::|             |::     |    |.|
pombe    34 IPVVEPKISEFVDMESFIRRVERLGKKYGAIKVVRPSSVLNPWNEDTMKPSDVKMDLWLERMVRR 98

  Fly    61 KSGY-----DIDNINMTIPAPICQVVTGAHGVYQ--QINIQQRRQMTLRQFMEKANSELHQTPRH 118
            |..|     |||:              |:.|..:  .:|:..|       |...|.|.       
pombe    99 KGEYFEIQSDIDH--------------GSAGPKKPTDMNVDDR-------FPSNAGSS------- 135

  Fly   119 FDYDDLERK-------YWKNITYISPLYAADVKGSLSDEDLDVWNIGRLDTILNLVNTDYNIIID 176
               :|.|..       ||:::|:.|..|....:.|:....:...:..:.|.:....||   :|..
pombe   136 ---NDFENNVAKAIAYYWRSLTHDSLWYGYTNRPSIPFYFIPSISAAQKDRVHLRSNT---LINT 194

  Fly   177 GVNTAYLYFGMWKSSFAWHTEDMDLYSINYLHFGAPKTWYAIPPAYGRRLEKLANETFSENYQEC 241
            ..|..:|:.|.||::..|..|..:|:::.....|:...||.||.|:....:|||.:...:.:..|
pombe   195 WPNVGHLFAGKWKTTLPWRVESPELHAVQVHLGGSSLQWYVIPSAHSESFKKLAGKLAQDEHWRC 259

  Fly   242 NAYLRHKMTMISPKVLRQHNIPYNKITQEAGEIMITFPFGYHAGFNHGFNGAESTNFASKRWIEY 306
            :.:|.|:..:..|..|.|:.|.......:..|::||||..:|:.|                    
pombe   260 SDFLLHQNILFPPSTLVQNGIVTYSTVLKQDELLITFPGTHHSAF-------------------- 304

  Fly   307 GKRASICRCRSDMVKISMETFVRRFQPERYDNWLKGQDMGCHPEEPGKICAAAPPTLNEYE---- 367
                    |..|.|       :|||                        ...:|.:.:.||    
pombe   305 --------CLGDAV-------LRRF------------------------VFRSPRSASNYEFSNL 330

  Fly   368 ----KQENLRAAKS---EEESPQKRGCSL------------------AGN------GCERNAESA 401
                ..|:|.::||   ....|| |.||.                  :||      ..:.|:.|.
pombe   331 RRLMVSESLYSSKSLWPHSHKPQ-RACSQKFLDEFYLHDLPESNIHDSGNFHPIHSSVDNNSFSQ 394

  Fly   402 EDVDDKASVS 411
            .|.|...|::
pombe   395 RDFDSPNSIN 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4ANP_610331.1 JmjN 17..59 CDD:301729 10/62 (16%)
JmjC 182..298 CDD:202224 30/115 (26%)
jmj3NP_595639.1 JmjN 33..74 CDD:128818 8/39 (21%)
JmjC 200..316 CDD:202224 36/174 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10694
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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