DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4A and brpf3b

DIOPT Version :9

Sequence 1:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster
Sequence 2:XP_005166793.1 Gene:brpf3b / 100003354 ZFINID:ZDB-GENE-081104-468 Length:1222 Species:Danio rerio


Alignment Length:529 Identity:97/529 - (18%)
Similarity:163/529 - (30%) Gaps:171/529 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 YIEYIESRGAHLAGLAKIQPPAEWVPRKSGYDID-NINMTIPAPICQVVTGAHGVYQQINIQQR- 96
            |:|:|    .|....:.:|...|....:|..|:: :.|:.|..  |.:......|:.|..|:.| 
Zfish   641 YLEFI----THPMDFSTMQSKLEAHKYRSVTDLEADFNLMISN--CLLYNAKDTVFYQAAIRLRD 699

  Fly    97 ----------RQMTLRQFMEKANSELHQTPRHFDY-----DDLERKYWKNITYISP--------- 137
                      ||.....|.......|.::|...||     :|::       |.:.|         
Zfish   700 LGGAILRHAQRQAQNTGFDLDTGMHLAESPNKNDYYRCTFEDVD-------TLLDPDNRLHMTTE 757

  Fly   138 ------LYAADVKGSLSDEDLDVWNIGRLDTILNLVNTDYNIIIDGVNTAYLYFGMWKSSFAWHT 196
                  |...||..|:.........:..|...:|.|....|:     ..:::..|..|.......
Zfish   758 NQLRELLEKLDVVTSMRSSGARTRRVRLLRREINKVRFKQNL-----KNSHMLNGDLKEDDDEDD 817

  Fly   197 EDMDLYSINYLHFGA--------------PKTWYAIPPAYGRRLEK---LANETFSENYQECNAY 244
            ||.::.:.:.|...:              ..|..|:.|..|...::   |...|.......|   
Zfish   818 EDKEMDADHNLSSSSSDKDDCKSTPPPMLEPTGLALSPPPGDTPQEPPTLRPMTSDPRTSSC--- 879

  Fly   245 LRHKMTMISPKVLRQHN---------IPYN---KITQEAGEIMITFPFGYHAGFNHGFNGAESTN 297
                    .||.|:.::         .|.|   |:.....||.:             |||..||.
Zfish   880 --------PPKRLKLNSERQELDSDPTPMNSCTKLEDAPPEIKL-------------FNGLSSTE 923

  Fly   298 FASK-RWIEYGKRASICRCRSDMVKISMETFVRRFQPERYDNWLKGQDMGCHPEEPGKI-----C 356
            ..|: .....|:|.|:      :.|.:...  .:.|.|| ||.::..:     .|.|..     |
Zfish   924 SPSRPNTGGVGRRTSV------LFKKAKNG--AKLQRER-DNQMQNGN-----REDGDAARTHNC 974

  Fly   357 AA-------------APPTLNEYEKQENLRAAKSEEESPQKRGC-------SLAGNGCERNAESA 401
            .|             .||.::...||:    .:|...||::...       ....||..::.:..
Zfish   975 TATVKTETTAQPKPSTPPPISVPAKQQ----TRSHSCSPERERTPPRLTLEPALTNGFRKHKDGG 1035

  Fly   402 EDVDDKASVSSYSSCRQL-QPVVKLRKLPTIASVPEPSSAPKRYDFNTEAVVRVKRLWNELPCPD 465
            .|    :..||..:.|:| .|..|.|..|.::.||...:.....|:.                  
Zfish  1036 SD----SECSSSPTLRELISPPKKSRGKPALSKVPFLETVNGDSDYT------------------ 1078

  Fly   466 RGANLLTNG 474
             |.::|:||
Zfish  1079 -GTDVLSNG 1086

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4ANP_610331.1 JmjN 17..59 CDD:301729 6/24 (25%)
JmjC 182..298 CDD:202224 25/144 (17%)
brpf3bXP_005166793.1 EPL1 63..231 CDD:287484
PHD_BRPF 249..302 CDD:277047
PHD_SF 306..423 CDD:304600
Kinesin-relat_1 535..>594 CDD:289481
Bromo_brd1_like 608..705 CDD:99944 15/69 (22%)
BR140_related 1091..1206 CDD:99900
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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