DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul1 and CUL4

DIOPT Version :9

Sequence 1:NP_523655.1 Gene:Cul1 / 35742 FlyBaseID:FBgn0015509 Length:774 Species:Drosophila melanogaster
Sequence 2:NP_568658.1 Gene:CUL4 / 834663 AraportID:AT5G46210 Length:792 Species:Arabidopsis thaliana


Alignment Length:798 Identity:243/798 - (30%)
Similarity:384/798 - (48%) Gaps:107/798 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 QTTQKLV------------NLDD-IWSELVEGIMQVFEHEK------SLTRSQYMRFYTHVYDYC 53
            |.|:|.|            |.:: .|.:|...|..:|..:|      ||        |..|.:.|
plant    71 QPTKKFVIKLNKAKPTLPTNFEENTWEKLQSAIRAIFLKKKISFDLESL--------YQAVDNLC 127

  Fly    54 TSVSAAPSGRSSGKTGGAQLVGKKLYDRLEQFLKSYLSELLTKFKAISGEE----VLLSRYTKQW 114
            ..           |..|      ||||::|:..:.::|..|   :::.|:.    |.|||..|.|
plant   128 LH-----------KLDG------KLYDQIEKECEEHISAAL---QSLVGQNTDLTVFLSRVEKCW 172

  Fly   115 KSYQFSSTVLDGICNYLNRNWVKRECEEGQKGIYKIYRLALVAWKGHLFQV--LNEPVTKAVLKS 177
            :.:.....::..|...|:|.:|.:     ...:..::.:.|..::.||...  :.:...|.:|..
plant   173 QDFCDQMLMIRSIALTLDRKYVIQ-----NPNVRSLWEMGLQLFRKHLSLAPEVEQRTVKGLLSM 232

  Fly   178 IEEERQGKLINRSLVRDVIECYVELSFNEEDTDAEQQKLSVYKQNFENKFIADTSAFYEKESDAF 242
            ||:||..:.:||:|:..:::.:.              .|.:|.::||..|:..||.||..|...:
plant   233 IEKERLAEAVNRTLLSHLLKMFT--------------ALGIYMESFEKPFLEGTSEFYAAEGMKY 283

  Fly   243 LSTNTVTEYLKHVENRLEEETQRVRGFNSKNGLSYLHETTADVLKSTCEEVLIEKH-LKIFHTEF 306
            :..:.|.|||||||.||.||.:|.        :.|:...|...|.:|.|..|:|:| |.:....|
plant   284 MQQSDVPEYLKHVEGRLHEENERC--------ILYIDAVTRKPLITTVERQLLERHILVVLEKGF 340

  Fly   307 QNLLNADRNDDLKRMYSLVALSSKN-LTDLKSILENHILHQGTEAIAKCCTTDAANDPKTYVQTI 370
            ..|::..|.:||:||.:|  .|..| |..|:..|.:::...|.:.:     .|...| |..||::
plant   341 TTLMDGRRTEDLQRMQTL--FSRVNALESLRQALSSYVRKTGQKIV-----MDEEKD-KDMVQSL 397

  Fly   371 LDVHKKYNALVLTAFNNDNGFVAALDKACGKFINSNVVTIANSASKSP-ELLAKYCDLLLKKSSK 434
            ||.....:.:...:|..:..|        |..|..:...:.|.....| ||:||:.|..|:..:|
plant   398 LDFKASLDIIWEESFYKNESF--------GNTIKDSFEHLINLRQNRPAELIAKFLDEKLRAGNK 454

  Fly   435 NPEDKELEDNLNQVMVVFKYIEDKDVFQKYYSKMLAKRLVNHTSASDDAEAMMISKLKQTCGYEY 499
            ...::|||..|.:|:|:|::|:.||||:.:|.|.|||||:...|||.|||..||||||..||.::
plant   455 GTSEEELESVLEKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQF 519

  Fly   500 TVKLQRMFQDIGVSKDLNSYFKQ-YLAEKNLTMEIDFGIEVLSSGSWPFQLSNNFLLPSELERSV 563
            |.||:.||:||.:||::|..||| ..|...|...|:..:.||::|.||.....:..||.||....
plant   520 TNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVKLPHELNVYQ 584

  Fly   564 RQFNEFYAARHSGRKLNWLYQMCKGELIMNVNRNNSSTYTLQASTFQMSVLLQFNDQLSFTVQQL 628
            ..|.|||.:::|||:|.|  |...|..::..:.:.... .|..|.||..||:.|||.:..:.:.:
plant   585 DIFKEFYLSKYSGRRLMW--QNSLGHCVLKADFSKGKK-ELAVSLFQAVVLMLFNDAMKLSFEDI 646

  Fly   629 QDNTQTQQENLIQVLQILL--KAKVLTSSDNENSLTPESTVELFLDYKNKKRRININQPLKTELK 691
            :|:|..:.:.|.:.||.|.  |.:||..:.....:......|...::.....||.:|.....|..
plant   647 KDSTSIEDKELRRTLQSLACGKVRVLQKNPKGRDVEDGDEFEFNDEFAAPLYRIKVNAIQMKETV 711

  Fly   692 VEQETVHKHIEEDRKLLIQAAIVRIMKMRKRLNHTNLISEVLNQLSTRFKPKVPVIKKCIDILIE 756
            .|..:..:.:.:||:..|.||||||||.||.|:||.||:|:..||....||  ..:||.|:.||:
plant   712 EENTSTTERVFQDRQYQIDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLID 774

  Fly   757 KEYLERMEGHKDTYSYLA 774
            :|||||.:.:...|:|||
plant   775 REYLEREKSNPQIYNYLA 792

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul1NP_523655.1 Cullin 21..669 CDD:279260 194/665 (29%)
CULLIN 454..593 CDD:214545 62/139 (45%)
Cullin_Nedd8 701..765 CDD:214883 33/63 (52%)
CUL4NP_568658.1 Cullin 96..693 CDD:395716 196/670 (29%)
Cullin_Nedd8 724..780 CDD:402267 31/57 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11932
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.930

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