DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul1 and cul3b

DIOPT Version :9

Sequence 1:NP_523655.1 Gene:Cul1 / 35742 FlyBaseID:FBgn0015509 Length:774 Species:Drosophila melanogaster
Sequence 2:NP_001177414.1 Gene:cul3b / 572370 ZFINID:ZDB-GENE-081007-1 Length:766 Species:Danio rerio


Alignment Length:833 Identity:230/833 - (27%)
Similarity:402/833 - (48%) Gaps:129/833 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNRSGNSQTT------------QKLVNLDDIWSELVEGIMQVFEHEKS------LTRSQY-MRFY 46
            :::.|..:.|            :|.||  :||..|...|.::.....|      |.|:.| |..:
Zfish     4 LSKGGTKKDTKMRIRAFPMTMDEKYVN--NIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLH 66

  Fly    47 THVYDYCTSVSAAPSGRSSGKTGGAQLVGKKLYDRLEQFLKSYLSELLTKFKAISGEEVL----- 106
            .|                          |:|||..|.:.:..:   |:.|.:    |:||     
Zfish    67 KH--------------------------GEKLYTGLREVVTEH---LINKVR----EDVLNSLNN 98

  Fly   107 --LSRYTKQWKSYQFSSTVLDGICNYLNRNWVKRECEEGQKGIYKIYRLALVAWKGHL--FQVLN 167
              |....:.|..:|.:..::..|..|::|.:|:      |..:..:|.|.|:.::..:  :..:.
Zfish    99 NFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQ------QNNVENVYNLGLIIFRDQVVRYGCIR 157

  Fly   168 EPVTKAVLKSIEEERQGKLINRSLVRDVIECYVELSFNEEDTDAEQQKLSVYKQNFENKFIADTS 232
            :.:.:.:|..|..||:|::::|..:|:..:..:.|..         :..|||:::||..|:..::
Zfish   158 DHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGL---------EGRSVYEEDFEAPFLEMSA 213

  Fly   233 AFYEKESDAFLSTNTVTEYLKHVENRLEEETQRVRGFNSKNGLSYLHETTADVLKSTCEEVLIEK 297
            .|::.||..||:.|:.:.|:|.||.|:.||.:||        :..|.::|.:.:....|..||.|
Zfish   214 EFFQMESQKFLAENSASVYIKKVEARINEEIERV--------IHCLDKSTEEPIVKVVERELISK 270

  Fly   298 HLKIFHTEFQN-----LLNADRNDDLKRMYSLVALSSKNLTDLKSILENHILHQGTEAIAKCCTT 357
            |:|.. .|.:|     :|...:.:||..||.|.:.....|..:...:.:::..||...:::   .
Zfish   271 HMKTI-VEMENSGLVHMLKNGKTEDLACMYKLFSRVPNGLKTMCECMSSYLREQGKALVSE---E 331

  Fly   358 DAANDPKTYVQTILDVHKKYNALVLTAFNNDNGFVAALDKACGKFINSNVVTIANSASKSPELLA 422
            ....:|..|:|.:||:..:::..:..:||||..|...:......|:|.|        |:|||.|:
Zfish   332 GEGKNPVDYIQGLLDLKSRFDRFLQESFNNDRLFKQTIAGDFEYFLNLN--------SRSPEYLS 388

  Fly   423 KYCDLLLKKSSKNPEDKELEDNLNQVMVVFKYIEDKDVFQKYYSKMLAKRLVNHTSASDDAEAMM 487
            .:.|..|||..|...::|:|..|::.||:|:::::||||::||.:.||:||:.:.|.|||:|..|
Zfish   389 LFIDDKLKKGVKGLTEQEVESILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNM 453

  Fly   488 ISKLKQTCGYEYTVKLQRMFQDIGVSKDLNSYFKQYLAEKNLTM-EIDFGIEVLSSGSWPFQLSN 551
            |||||..||.::|.||:.||:|:.:|......|:|:|....::: .:|..:.||::|.||.|.:.
Zfish   454 ISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLTSTGVSLGGVDLIVRVLTTGYWPTQSAT 518

  Fly   552 -NFLLPSELERSVRQFNEFYAARHSGRKLNWLYQMCKGELI------------------MNVNRN 597
             ...:|.....:...|..||.|:||||:|...:.|...:|.                  ..|..:
Zfish   519 PKCNIPPSPRHAFEVFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPIKKEDGSDMVGGAQVTGS 583

  Fly   598 NSSTYTLQASTFQMSVLLQFNDQLSFTVQQLQDNTQTQQENLIQVLQILLKAK----VLTSSDNE 658
            |:..:.||.|||||::|:.||::...|.:::|..|...:..|::.||.|...|    |||.....
Zfish   584 NTRKHILQVSTFQMTILMLFNNREKSTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKS 648

  Fly   659 NSLTPESTVELFLDYKNKKRRININ--QPLKTELKVEQETVHKHIEEDRKLLIQAAIVRIMKMRK 721
            ..:.......:...:.::..|:.|.  ...:.|...|::...:.:::|||..|:||||||||.||
Zfish   649 KEIENGHVFTVNDQFTSRLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRK 713

  Fly   722 RLNHTNLISEVLNQLSTRFKPKVPVIKKCIDILIEKEYLERMEGHKDTYSYLA 774
            ::.|..|::||..||..||.|...||||.|:.|||:|||.|....:..|:|:|
Zfish   714 KMQHNVLVAEVTQQLRARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 766

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul1NP_523655.1 Cullin 21..669 CDD:279260 181/692 (26%)
CULLIN 454..593 CDD:214545 52/158 (33%)
Cullin_Nedd8 701..765 CDD:214883 35/63 (56%)
cul3bNP_001177414.1 Cullin 34..662 CDD:279260 181/695 (26%)
CULLIN 420..562 CDD:214545 52/141 (37%)
Cullin_Nedd8 698..758 CDD:287520 33/59 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.930

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