DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul1 and AT1G43140

DIOPT Version :10

Sequence 1:NP_523655.1 Gene:Cul1 / 35742 FlyBaseID:FBgn0015509 Length:774 Species:Drosophila melanogaster
Sequence 2:NP_175007.2 Gene:AT1G43140 / 3767291 AraportID:AT1G43140 Length:721 Species:Arabidopsis thaliana


Alignment Length:785 Identity:216/785 - (27%)
Similarity:380/785 - (48%) Gaps:96/785 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 QKLVNLDDIWSELVEGI---MQVFE--HEKSLTRSQYMRFYTHVYDYCTSVSAAPSGRSSGKTGG 70
            ::|:.|::.||.:..|:   .::.|  .|......||:..||.:||.|  :...|:..|      
plant    12 KELILLEEGWSVMKTGVAKLQRILEDLSEPPFDPGQYINLYTIIYDMC--LQQPPNDYS------ 68

  Fly    71 AQLVGKKLYDRLEQFLKSYLSE-LLTKFKAISGEEVLLSRYTKQWKSYQFSSTVLDGICNYLNRN 134
                 ::||::....:..|..| :|...:...| |.:|....|:|.:::.....|...|.||:|.
plant    69 -----QELYNKYRGVVDHYNKETVLPSMRERHG-EYMLRELVKRWANHKILVRWLSRFCFYLDRF 127

  Fly   135 WVKRECEEGQKGIYKIYRLALVAWKGHLFQVLNEPVTKAVLKSIEEERQGKLINRSLVRDVIECY 199
            :|.|      :|:..:..:...::...::|.:.......:|..|.:||:|:.|:|:||::||:.|
plant   128 YVAR------RGLPTLNDVGFTSFHDLVYQEIQSEAKDVLLALIHKEREGEQIDRTLVKNVIDVY 186

  Fly   200 VELSFNEEDTDAEQQKLSVYKQNFENKFIADTSAFYEKESDAFLSTNTVTEYLKHVENRLEEETQ 264
            ......:         :.:|:::||:..:.||:::|.:::..:...::..:|:...|..|:.|.:
plant   187 CGNGVGQ---------MVIYEEDFESFLLQDTASYYSRKASRWSQEDSCPDYMLKAEECLKLEKE 242

  Fly   265 RVRGFNSKNGLSYLHETTADVLKSTCEE---VLIEKHL-KIFHTEFQNLLNADRNDDLKRMYSLV 325
            ||        .:|||.||...|....:.   |::.|.| :..|:....||..|:..||.|||.|.
plant   243 RV--------TNYLHSTTEPKLVEKVQNELLVVVAKQLIENEHSGCLALLRDDKMGDLSRMYRLY 299

  Fly   326 ALSSKNLTDLKSILENHILHQGTEAI---AKCCTTDAANDPKTYVQTILDVHKKYNALVLTAFNN 387
            .|..:.|..:..:.:.|:..:|...|   |...|...|:..:..|:..:::|.||...|...|..
plant   300 RLIPQGLEPIADLFKQHVTAEGNALIKQAADAATNQDASASQVLVRKEIELHDKYMVYVDECFQK 364

  Fly   388 DNGFVAALDKACGKFINSNVVTIANSASKSPELLAKYCDLLLKK--SSKNPEDKELEDNLNQVMV 450
            .:.|...|.:|...|.|..|     :.:.|.|:||.|||.:||.  .|:...|:..|..|.:|:.
plant   365 HSLFHKLLKEAFEVFCNKTV-----AGASSAEILATYCDNILKTRGGSEKLSDEATEITLEKVVN 424

  Fly   451 VFKYIEDKDVFQKYYSKMLAKRLVNHTSASDDAEAMMISKLKQTCGYEYTVKLQRMFQDIGVSKD 515
            :..||.|||:|.::|.|..|:||:...|.                       :.:...||.::::
plant   425 LLVYISDKDLFAEFYRKKQARRLLFDRSG-----------------------IMKEVTDITLARE 466

  Fly   516 LNSYFKQYLAEKNLT--MEIDFGIEVLSSGSWPFQLSNNFLLPSELERSVRQFNEFYAARHSGRK 578
            |.:.|..||: .|:|  :.|||.:.||::|.||...:.:..||:|:...|..|..||..:.:.|:
plant   467 LQTNFVDYLS-ANMTTKLGIDFTVTVLTTGFWPSYKTTDLNLPTEMVNCVEAFKVFYGTKTNSRR 530

  Fly   579 LNWLYQMCKGELIMNVNRNNSSTYTLQASTFQMSVLLQFN--DQLSFTVQQLQDNTQTQQENLIQ 641
            |:|:|.:....::   .:....|..|..||:|.:|||.||  ::||:|  ::.:......|:|::
plant   531 LSWIYSLGTCHIL---GKFEKKTMELVVSTYQAAVLLLFNNAERLSYT--EISEQLNLSHEDLVR 590

  Fly   642 VLQIL--LKAKVLTSSDNENSLTPESTVELFLDYKNKKRRININQPLKTELKVEQETVHKHIEED 704
            :|..|  ||.|:|.......:::...|.|....:.:|.|:|.:..|...|.|    .|.:.:::|
plant   591 LLHSLSCLKYKILIKEPMSRTISKTDTFEFNSKFTDKMRKIRVPLPPMDERK----KVVEDVDKD 651

  Fly   705 RKLLIQAAIVRIMKMRKRLNHTNLISEVLNQLSTRFKPKVPVIKKCIDILIEKEYLERMEGHKDT 769
            |:..|.||:|||||.||.|.|..|:||.:..||..|||.:.:|||.|:.||.::||||...:.:|
plant   652 RRYAIDAALVRIMKSRKVLAHQQLVSECVEHLSKMFKPDIKMIKKRIEDLINRDYLERDTENANT 716

  Fly   770 YSYLA 774
            :.|:|
plant   717 FKYVA 721

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul1NP_523655.1 Cullin 20..673 CDD:459983 172/673 (26%)
Cullin_Nedd8 704..765 CDD:463146 32/60 (53%)
AT1G43140NP_175007.2 Cullin 21..624 CDD:459983 172/673 (26%)
Cullin_Nedd8 651..713 CDD:463146 32/61 (52%)

Return to query results.
Submit another query.