DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul1 and Cul1

DIOPT Version :9

Sequence 1:NP_523655.1 Gene:Cul1 / 35742 FlyBaseID:FBgn0015509 Length:774 Species:Drosophila melanogaster
Sequence 2:XP_006236471.1 Gene:Cul1 / 362356 RGDID:1308157 Length:777 Species:Rattus norvegicus


Alignment Length:763 Identity:470/763 - (61%)
Similarity:574/763 - (75%) Gaps:32/763 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 NRSGNSQTTQKLVNLDDIWSELVEGIMQVFEHEKSLTRSQYMRFYTHVYDYCTSV---------S 57
            |||.|.... |.:.||.||.:|..||.||:..: |:.:|:||..|||||:|||||         .
  Rat     4 NRSQNPHGL-KQIGLDQIWDDLRAGIQQVYTRQ-SMAKSRYMELYTHVYNYCTSVHQSNQARGAG 66

  Fly    58 AAPSGRSSGKT-GGAQLVGKKLYDRLEQFLKSYLSELLTKFKAISGEEVLLSRYTKQWKSYQFSS 121
            ..||....|:| ||||.||.:||.||::|||:||:.||...:.:..|.| |..||:||:.|:|||
  Rat    67 VPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESV-LKFYTQQWEDYRFSS 130

  Fly   122 TVLDGICNYLNRNWVKRECEEGQKGIYKIYRLALVAWKGHLFQVLNEPVTKAVLKSIEEERQGKL 186
            .||:|||.||||:||:|||:||:||||:||.||||.|:..||:.||:.||.||||.||:||.|:.
  Rat   131 KVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGET 195

  Fly   187 INRSLVRDVIECYVELSFNEEDTDAEQQKLSVYKQNFENKFIADTSAFYEKESDAFLSTNTVTEY 251
            ||..|:..|::.||||..||:|..|:...|:|||::||::|:|||..||.:||..||..|.||||
  Rat   196 INTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEY 260

  Fly   252 LKHVENRLEEETQRVRGFNSKNGLSYLHETTADVLKSTCEEVLIEKHLKIFHTEFQNLLNADRND 316
            :|..|.||.||.:||:        .||||:|.|.|...||:|||||||:||||||||||:||:|:
  Rat   261 MKKAEARLLEEQRRVQ--------VYLHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNE 317

  Fly   317 DLKRMYSLVALSSKNLTDLKSILENHILHQGTEAIAKCCTTDAANDPKTYVQTILDVHKKYNALV 381
            ||.|||:||:.....|.:||.:||.||.:||..||.||... |.||||.||||:|||||||||||
  Rat   318 DLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEA-ALNDPKMYVQTVLDVHKKYNALV 381

  Fly   382 LTAFNNDNGFVAALDKACGKFINSNVVT-IANSASKSPELLAKYCDLLLKKSSKNPEDKELEDNL 445
            ::|||||.|||||||||||:|||:|.|| :|.|:||||||||:|||.||||||||||:.||||.|
  Rat   382 MSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTL 446

  Fly   446 NQVMVVFKYIEDKDVFQKYYSKMLAKRLVNHTSASDDAEAMMISKLKQTCGYEYTVKLQRMFQDI 510
            ||||||||||||||||||:|:||||||||:..||||||||.|||||||.||:|||.|||||||||
  Rat   447 NQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDI 511

  Fly   511 GVSKDLNSYFKQYLAEKNLTMEIDFGIEVLSSGSWPFQLSNNFLLPSELERSVRQFNEFYAARHS 575
            |||||||..||::|.... .:::||.|:||||||||||.|..|.||||||||.::|..|||:|||
  Rat   512 GVSKDLNEQFKKHLTNSE-PLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHS 575

  Fly   576 GRKLNWLYQMCKGELIMNVNRNNSSTYTLQASTFQMSVLLQFNDQLSFTVQQLQDNTQTQQENLI 640
            ||||.||||:.||||:.|..:|.   ||||||||||::|||:|.:.::|||||.|:||.:.:.|.
  Rat   576 GRKLTWLYQLSKGELVTNCFKNR---YTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILA 637

  Fly   641 QVLQILLKAKVLTSSD-----NENSLTPESTVELFLDYKNKKRRININQPLKTELKVEQETVHKH 700
            ||||||||:|:|...|     :|..|.|::.::|:|.|||||.|:|||.|:|||.|.||||.||:
  Rat   638 QVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKN 702

  Fly   701 IEEDRKLLIQAAIVRIMKMRKRLNHTNLISEVLNQLSTRFKPKVPVIK 748
            |||||||||||||||||||||.|.|..|:.|||.|||:||||:|||||
  Rat   703 IEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIK 750

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul1NP_523655.1 Cullin 21..669 CDD:279260 400/663 (60%)
CULLIN 454..593 CDD:214545 100/138 (72%)
Cullin_Nedd8 701..765 CDD:214883 39/48 (81%)
Cul1XP_006236471.1 Cullin 21..660 CDD:395716 399/654 (61%)
Cullin_Nedd8 706..>750 CDD:402267 34/43 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352840
Domainoid 1 1.000 757 1.000 Domainoid score I85
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2663
Inparanoid 1 1.050 929 1.000 Inparanoid score I333
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 1 1.000 - - FOG0003709
OrthoInspector 1 1.000 - - oto97189
orthoMCL 1 0.900 - - OOG6_101330
Panther 1 1.100 - - LDO PTHR11932
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1841
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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