DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul1 and Cul2

DIOPT Version :9

Sequence 1:NP_523655.1 Gene:Cul1 / 35742 FlyBaseID:FBgn0015509 Length:774 Species:Drosophila melanogaster
Sequence 2:XP_006254134.1 Gene:Cul2 / 361258 RGDID:1310644 Length:745 Species:Rattus norvegicus


Alignment Length:785 Identity:264/785 - (33%)
Similarity:438/785 - (55%) Gaps:67/785 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 KLVNLDDIWSELVEGIMQVFEHEKSLTRSQYMRFYTHVYDYCTSVSAAPSGRSSGKTGGAQLVGK 76
            ::|:.|:.|::|:..|..|...| .:.|:.:...::.:|..|.   |.|           :.:|:
  Rat     6 RVVDFDETWNKLLTTIKAVVMLE-YVERATWNDRFSDIYALCV---AYP-----------EPLGE 55

  Fly    77 KLYDRLEQFLKSYLSELLTKFKAISGEEVLLSRYTKQWKSYQFSSTVLDGICNYLNRNWVKR--- 138
            :||...:.||::::..|..  :.:..||.:|..|.:.|:.|...:..:|.:..|||..::|:   
  Rat    56 RLYAETKIFLENHVRHLYK--RVLESEEQVLVMYHRYWEEYSKGADYMDCLYRYLNTQYIKKNKL 118

  Fly   139 ---ECEEGQKGI------YKIYRLALVAWKGHLFQVLNEPVTKAVLKSIEEERQGKLINRSLVRD 194
               :.:.|..|:      .:|..|||..|:..:.:.|...:.:.:|:.|:.:|.|:..|:.::..
  Rat   119 TEADLQYGYGGVDMNEPLMEIGELALDMWRKLMVEPLQNILIRMLLREIKNDRGGEDPNQKVIHG 183

  Fly   195 VIECYVELSFNEEDTDAEQQK----LSVYKQNFENKFIADTSAFYEKESDAFLSTNTVTEYLKHV 255
            ||..:|.:         ||.|    |..|:..|.:.|:.:|..:|::|:...|..:..::|::.|
  Rat   184 VINSFVHV---------EQYKKKFPLKFYQGIFVSPFLTETGEYYKQEASNLLQESNCSQYMEKV 239

  Fly   256 ENRLEEETQRVRGFNSKNGLSYLHETTADVLKSTCEEVLIEKHLKIFHTEFQNLLNADRNDDLKR 320
            ..||::|..|.|        .|||.::...:...|::.::..||:..|:|..:::..:|.:|:..
  Rat   240 LGRLKDEEIRCR--------KYLHPSSYTKVIHECQQRMVADHLQFLHSECHSIIRHERKNDMAN 296

  Fly   321 MYSLVALSSKNLTDLKSILENHILHQGTEAIAKCCTTDAAND--PKTYVQTILDVHKKYNALVLT 383
            ||.|:...|..|..:...|:.||..:|..|     |::...:  |..:|:::|:||.|:..|:.|
  Rat   297 MYVLLRAVSSGLPHMIEELQRHIHDEGLRA-----TSNLTQEHMPTLFVESVLEVHGKFVQLINT 356

  Fly   384 AFNNDNGFVAALDKACGKFINSNVVTIANSASKSPELLAKYCDLLLKKSSKNPEDKELEDNLNQV 448
            ..|.|..|::|||||....:|...   ..|..|:|||||||||.|||||:|...:.|:||.|...
  Rat   357 VLNGDQHFMSALDKALTSVVNYRE---PKSVCKAPELLAKYCDNLLKKSAKGMTENEVEDKLTSF 418

  Fly   449 MVVFKYIEDKDVFQKYYSKMLAKRLVNHTSASDDAEAMMISKLKQTCGYEYTVKLQRMFQDIGVS 513
            :.|||||:|||||||:|::||||||::..|.|.|:|..||:||||.||||:|.||.||:.|:.||
  Rat   419 ITVFKYIDDKDVFQKFYARMLAKRLIHGLSMSMDSEEAMINKLKQACGYEFTSKLHRMYTDMSVS 483

  Fly   514 KDLNSYFKQYLAEKNLTME--IDFGIEVLSSGSWPFQL--SNNFLLPSELERSVRQFNEFYAARH 574
            .|||:.|..::..::..::  |.|.|.||.:|:||...  |:.|.:|.|||:||:.|..||:...
  Rat   484 ADLNNKFNNFIRNQDTVIDLGISFQIYVLQAGAWPLTQAPSSTFAIPQELEKSVQMFELFYSQHF 548

  Fly   575 SGRKLNWLYQMCKGELIMNVNRNNSSTYTLQASTFQMSVLLQFNDQLSFTVQQLQDNTQTQQENL 639
            |||||.||:.:|.||:.||.   ....|....:|:||:|||.||:..:.:.::|||:||..::.|
  Rat   549 SGRKLTWLHYLCTGEVKMNY---LGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKEL 610

  Fly   640 IQVLQILLKAKVLTSSDNENSLTPESTVELFLDYKNKKRRININQPLKTELKVEQETVHKHIEED 704
            .:.::.||..|::.....:..:..||:..|.:.:.:|:.:..|...::.:...|.|.....::||
  Rat   611 TKTIKSLLDVKMINHDSEKEDIDAESSFSLNMSFSSKRTKFKITTSMQKDTPQELEQTRSAVDED 675

  Fly   705 RKLLIQAAIVRIMKMRKRLNHTNLISEVLNQLSTRFKPKVPVIKKCIDILIEKEYLERMEGHKDT 769
            ||:.:|||||||||.||.|.|..||.||::|...||.|.:.:|||||::||:|:|:||.:...|.
  Rat   676 RKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADE 740

  Fly   770 YSYLA 774
            |||:|
  Rat   741 YSYVA 745

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul1NP_523655.1 Cullin 21..669 CDD:279260 215/669 (32%)
CULLIN 454..593 CDD:214545 71/142 (50%)
Cullin_Nedd8 701..765 CDD:214883 36/63 (57%)
Cul2XP_006254134.1 Cullin 14..644 CDD:395716 217/674 (32%)
Cullin_Nedd8 675..735 CDD:402267 35/59 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.830

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