DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul1 and cul1

DIOPT Version :9

Sequence 1:NP_523655.1 Gene:Cul1 / 35742 FlyBaseID:FBgn0015509 Length:774 Species:Drosophila melanogaster
Sequence 2:NP_594259.1 Gene:cul1 / 2542393 PomBaseID:SPAC17G6.12 Length:767 Species:Schizosaccharomyces pombe


Alignment Length:770 Identity:307/770 - (39%)
Similarity:464/770 - (60%) Gaps:23/770 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 QKLVNLDDIWSELVEGIMQVFEH-EKSLTRSQYMRFYTHVYDYCTSVSAAPS-GRSSGKTGGAQL 73
            :|..:|:..|..|..|:.|:||. ::.:|.::||..||.:::||...|...: ...:.:|  |.:
pombe    15 KKYDSLNGTWDFLKTGVSQIFERLDEGMTITKYMELYTAIHNYCADASKTITVDNFNDQT--ANV 77

  Fly    74 VGKKLYDRLEQFLKSYLSELLTKFKAISGEEVLLSRYTKQWKSYQFSSTVLDGICNYLNRNWVKR 138
            :|:.||:.|..:|:.||:.|..:..:.:..|..|:.|.|.|..:..|:..::.:..||||.|||.
pombe    78 LGEALYNNLVLYLEEYLARLRKECISQTNHEEQLAAYAKYWTRFTTSARFINHLFGYLNRYWVKL 142

  Fly   139 ECEEGQKGIYKIYRLALVAWKGHLFQVLNEPVTKAVLKSIEEERQGKLINRSLVRDVIECYVELS 203
            :....:..:|.||.|.||:|..|:|..:.:.:.:.:|....::|..:..:...|...::....||
pombe   143 KNRFTETLVYDIYTLCLVSWHHHVFSHIRDSLLQNLLYMFTKKRLYEPTDMKYVEVCVDSITSLS 207

  Fly   204 FNEEDTDAEQQKLSVYKQNFENKFIADTSAFYEKESDAFLSTNTVTEYLKHVENRLEEETQRVRG 268
            |::  ||..:..||.||..||..||.:|..||.|||..:|:::::|:|||..|.||.||.:.|| 
pombe   208 FDK--TDMTKPNLSSYKTFFETNFIENTKNFYAKESSEYLASHSITDYLKKAEIRLAEEEELVR- 269

  Fly   269 FNSKNGLSYLHETTADVLKSTCEEVLIEKHLKIFHTEFQNLLNADRNDDLKRMYSLVALSSKNLT 333
                   .||||:|...|....|:|||.:|.::.|.:|..:|:.:.::|:.|||.|::.:...|.
pombe   270 -------LYLHESTLKPLLEATEDVLIAQHEEVLHNDFARMLDQNCSEDIIRMYRLMSRTPNGLQ 327

  Fly   334 DLKSILENHILHQGTEAIAKCCTT---DAANDPKTYVQTILDVHKKYNALVLTAFNNDNGFVAAL 395
            .|:...|..:...|..|:||....   :|..|||.|::.:|..:|....||.|||:.|..|..:|
pombe   328 PLRQTFEEFVKRSGFAAVAKIVPQVGGEADVDPKEYMEMLLSTYKASKELVNTAFHGDTDFTKSL 392

  Fly   396 DKACGKFINSNVVTIANSASKSPELLAKYCDLLLKKSSKNPEDKELEDNLNQVMVVFKYIEDKDV 460
            |.|..:.:|.||| ...|:|:||||||||.|.:|:||:||.:..::||.|:.::::|:|:|||||
pombe   393 DTAFRELVNRNVV-CQRSSSRSPELLAKYADSILRKSNKNVDIDDVEDCLSSIIIIFRYVEDKDV 456

  Fly   461 FQKYYSKMLAKRLVNHTSASDDAEAMMISKLKQTCGYEYTVKLQRMFQDIGVSKDLNSYFKQYLA 525
            ||.:|:|:|||||||.||.|.|||:.|:||||:.||:|||.|||||||||.:|:::...|.|  .
pombe   457 FQNFYTKLLAKRLVNGTSNSQDAESSMLSKLKEVCGFEYTSKLQRMFQDISLSQEITEAFWQ--L 519

  Fly   526 EKNLTMEIDFGIEVLSSGSWPFQLSN-NFLLPSELERSVRQFNEFYAARHSGRKLNWLYQMCKGE 589
            .::....|||...||.:..||...:| ||.||.||......|..:|.:.|:||||:||:.:.|||
pombe   520 PQSRAGNIDFSALVLGTSFWPLSPNNVNFHLPEELVPLYEGFQNYYYSCHNGRKLSWLFHLSKGE 584

  Fly   590 LIMNVNRNNSSTYTLQASTFQMSVLLQFNDQLSFTVQQLQDNTQTQQENLIQVLQILLKAKVLTS 654
            :...:|...:.||..|.||:||.|||.:|.:.|:|.::|...|....:.|..:|.|.||||||..
pombe   585 IKARINPQTNVTYVFQVSTYQMGVLLLYNHRDSYTYEELAKITGLSTDFLTGILNIFLKAKVLLL 649

  Fly   655 SDNENSLTPESTVELFLDYKNKKRRININQPLKTELKVEQETVHKHIEEDRKLLIQAAIVRIMKM 719
            .||:....|.||.::..:::.||.|:.:|.|:::|.|.|....||.||||||||:|:|||||||.
pombe   650 GDNDKLGDPNSTYKINENFRMKKIRVQLNLPIRSEQKQESLETHKTIEEDRKLLLQSAIVRIMKA 714

  Fly   720 RKRLNHTNLISEVLNQLSTRFKPKVPVIKKCIDILIEKEYLERMEGHKDTYSYLA 774
            |:.|.|..|:.|.::|:.:||.|||..||:|||:||||||||| :| :|.|.|||
pombe   715 RRTLKHVVLVKETIDQIKSRFTPKVSDIKQCIDMLIEKEYLER-QG-RDEYIYLA 767

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul1NP_523655.1 Cullin 21..669 CDD:279260 247/653 (38%)
CULLIN 454..593 CDD:214545 71/139 (51%)
Cullin_Nedd8 701..765 CDD:214883 41/63 (65%)
cul1NP_594259.1 COG5647 1..767 CDD:227934 305/768 (40%)
CULLIN 450..589 CDD:214545 71/140 (51%)
Cullin_Nedd8 696..763 CDD:214883 43/68 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 437 1.000 Domainoid score I80
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2663
Inparanoid 1 1.050 542 1.000 Inparanoid score I205
OMA 1 1.010 - - QHG53685
OrthoFinder 1 1.000 - - FOG0003709
OrthoInspector 1 1.000 - - oto101294
orthoMCL 1 0.900 - - OOG6_101330
Panther 1 1.100 - - LDO PTHR11932
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R262
SonicParanoid 1 1.000 - - X1841
TreeFam 1 0.960 - -
1413.860

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