DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul1 and cul-1

DIOPT Version :9

Sequence 1:NP_523655.1 Gene:Cul1 / 35742 FlyBaseID:FBgn0015509 Length:774 Species:Drosophila melanogaster
Sequence 2:NP_499309.1 Gene:cul-1 / 176466 WormBaseID:WBGene00000836 Length:780 Species:Caenorhabditis elegans


Alignment Length:797 Identity:335/797 - (42%)
Similarity:488/797 - (61%) Gaps:47/797 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 NSQTTQKLVNLDDIWSELVEGIMQVFEHEKSLTRSQYMRFYTHVYDYCTSVSAAPSGR------- 63
            ||:..:...:.:.:|.:|.:|:...:..| ::....||..||.|||||||::.:.|.|       
 Worm     3 NSEPRRMTCDSEVVWKKLQDGLDVAYRRE-NMAPKDYMTLYTSVYDYCTSITLSTSRRDGEDGRA 66

  Fly    64 ---SSGKTGGAQLVGKKLYDRLEQFLKSYLSELLTKFKAISGEEVLLSRYTKQWKSYQFSSTVLD 125
               :..:|.||..||.::|.|:|:::|:|:..:..|...:|||: ||..||.:|::::.||.|:|
 Worm    67 ESSTPARTAGADFVGHEMYQRVEEYVKAYVIAVCEKGAELSGED-LLKYYTTEWENFRISSKVMD 130

  Fly   126 GICNYLNRNWVKRECEEGQKGIYKIYRLALVAWKGHLFQVLNEPVTKAVLKSIEEERQGKLINRS 190
            ||..||||:|::||.:||.:.||.:|.||||.||.:||..|.:.|..|:|:.|..||.|.:||..
 Worm   131 GIFAYLNRHWIRRELDEGHENIYMVYTLALVVWKRNLFNDLKDKVIDAMLELIRSERTGSMINSR 195

  Fly   191 LVRDVIECYVELSFNEEDT----DAEQQKLSVYKQNFENKFIADTSAFYEKESDAFLST-NTVTE 250
            .:..|:||.|||..::.:|    |||.:||:|||:.||.||:..|..||.:|:..|||. ..||:
 Worm   196 YISGVVECLVELGVDDSETDAKKDAETKKLAVYKEFFEVKFLEATRGFYTQEAANFLSNGGNVTD 260

  Fly   251 YLKHVENRLEEETQRVRGFNSKNGLSYLHETTADVLKSTCEEVLIEKHLKIFHTEFQNLLNADRN 315
            |:..||.||.:|..|.:        .||:.:|...|.:.||.|||...|......|..||...|:
 Worm   261 YMIKVETRLNQEDDRCQ--------LYLNSSTKTPLATCCESVLISNQLDFLQRHFGGLLVDKRD 317

  Fly   316 DDLKRMYSLVALSSKNLTDLKSILENHILHQGTEAIAKCCTTDAANDPKTYVQTILDVHKKYNAL 380
            |||.||:.|.......|.:|:..|||||..:|.:|:.: ...:||.|.|.||:|:|:||::|.:|
 Worm   318 DDLSRMFKLCDRVPNGLDELRKSLENHIAKEGHQALER-VAMEAATDAKLYVKTLLEVHERYQSL 381

  Fly   381 VLTAFNNDNGFVAALDKACGKFINSNVVT----IANSASKSPELLAKYCDLLLKKSSKNPEDKEL 441
            |..:|.|:.||:.:||||...|||:|.||    .....:||.||||:|||.||:||||.|::.||
 Worm   382 VNRSFKNEPGFMQSLDKAATSFINNNAVTKRAPPQAQLTKSAELLARYCDQLLRKSSKMPDEAEL 446

  Fly   442 EDNLNQVMVVFKYIEDKDVFQKYYSKMLAKRLVNHTSASDDAEAMMISKLKQTCGYEYTVKLQRM 506
            |:...::|||||||:|||||.|:|:||.:|||::..||||:|||..|:|||..||||||.:|.:|
 Worm   447 EELQTKIMVVFKYIDDKDVFSKFYTKMFSKRLISELSASDEAEANFITKLKSMCGYEYTARLSKM 511

  Fly   507 FQDIGVSKDLNSYFKQYLAEKNLTMEIDFGIEVLSSGSWPFQLSNNFLLPSELERSVRQFNEFYA 571
            ..|..|||||.:.||:..|:......::|.:.||||||||...:....||.:|.:::..|.:||.
 Worm   512 VNDTQVSKDLTADFKEKKADMLGQKSVEFNVLVLSSGSWPTFPTTPITLPQQLSKTIEIFGQFYN 576

  Fly   572 ARHSGRKLNWLYQMCKGELIMNVNRNNSST-----YTLQASTFQMSVLLQFNDQLSFTVQQLQDN 631
            .:.:||:|.|:|...:||:        :||     |...|:|.||..:|.||:|.|:||:|:...
 Worm   577 EKFNGRRLTWVYSQSRGEI--------TSTAFPKKYVFTATTAQMCTMLLFNEQDSYTVEQIAAA 633

  Fly   632 TQTQQENLIQVLQILLKAKVL---TSSDNENSLTPESTVELFLDYKNKKRRININQ-PLKTELKV 692
            |:..:::...::..|:|..||   |....|:.:...:||.|...|.|||.|::::: .:|.:...
 Worm   634 TKMDEKSAPAIVGSLIKNLVLKADTELQKEDEVPMTATVSLNKAYMNKKVRVDLSKFTMKQDAVR 698

  Fly   693 EQETVHKHIEEDRKLLIQAAIVRIMKMRKRLNHTNLISEVLNQLSTRFKPKVPVIKKCIDILIEK 757
            :.|.|.|::|||||.:|.|.||||||.|||:.|..|::||:.|||.||||||.:||:||..||||
 Worm   699 DTENVQKNVEEDRKSVISACIVRIMKTRKRVQHQQLMTEVITQLSGRFKPKVEMIKRCIGSLIEK 763

  Fly   758 EYLERMEGHKDTYSYLA 774
            ||:.|.||.||.|.|||
 Worm   764 EYMLRTEGQKDLYEYLA 780

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul1NP_523655.1 Cullin 21..669 CDD:279260 274/674 (41%)
CULLIN 454..593 CDD:214545 64/138 (46%)
Cullin_Nedd8 701..765 CDD:214883 40/63 (63%)
cul-1NP_499309.1 Cullin 18..677 CDD:279260 275/677 (41%)
CULLIN 459..599 CDD:214545 65/147 (44%)
Cullin_Nedd8 707..774 CDD:214883 42/66 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166363
Domainoid 1 1.000 493 1.000 Domainoid score I180
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2663
Inparanoid 1 1.050 602 1.000 Inparanoid score I509
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 1 1.000 - - FOG0003709
OrthoInspector 1 1.000 - - otm14352
orthoMCL 1 0.900 - - OOG6_101330
Panther 1 1.100 - - LDO PTHR11932
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R262
SonicParanoid 1 1.000 - - X1841
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.800

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