DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment phr and PHR1

DIOPT Version :9

Sequence 1:NP_523653.2 Gene:phr / 35735 FlyBaseID:FBgn0003082 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_849651.1 Gene:PHR1 / 837792 AraportID:AT1G12370 Length:496 Species:Arabidopsis thaliana


Alignment Length:474 Identity:237/474 - (50%)
Similarity:315/474 - (66%) Gaps:14/474 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 SFRKKRVRVLSK-TEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKF 157
            |.:..|:|:|.| :....:.::|.|||||.||.|::|||||:.|..||.:...|:.|||.|..:|
plant     6 SVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQF 70

  Fly   158 LNATIRHYKFMMGGLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAPLRLPRQW 222
            |:|..|...||:.||:::..|..:|.|||.||.|.|.|.:|.|:.......:|.||:|||..|:.
plant    71 LDAKARQLGFMLKGLRQLHHQIDSLQIPFFLLQGDAKETIPNFLTECGASHLVTDFSPLREIRRC 135

  Fly   223 VEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSVFPPVVRHP---H 284
            .::|.|....|:.:.:||||||||:|.||.|.||:|||||.|||..|.:||..||.:  .|   .
plant   136 KDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKL--EPPKKK 198

  Fly   285 GTGCKNVNTVDWSAAYASLQCD-MEVDEVQWAKPGYKAACQQLY----EFCSRRLRHFNDKRNDP 344
            .||..:...|||.:....:..: .||.|::|..||..|..:.|.    .|.::||::::..||:|
plant   199 WTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRLKNYSTDRNNP 263

  Fly   345 -TADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYNEHYDSL 408
             ...|||||||:||||.:||||||||.::.|.....:.|.|.||.||||||:||||:|..|||||
plant   264 IKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVDTFLEELIVRRELSDNFCYYQPHYDSL 328

  Fly   409 KGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYWAKKILE 473
            ||...||.::|..|..|||:..||||:|||.||.|.|||::||::|.:||||||:||||||||||
plant   329 KGAWEWARKSLMDHASDKREHIYSLEQLEKGLTADPLWNASQLEMVYQGKMHGFMRMYWAKKILE 393

  Fly   474 WTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAIFGKVRYMNYQGCRRKF 538
            ||..||.||..:|.||:||.:|||||:|||||||||.||||.|||||.:|||:|||||.||:|||
plant   394 WTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKF 458

  Fly   539 DVNAFV--MRYGGKVHKKK 555
            :|::::  ::....|.|||
plant   459 NVDSYISYVKSLVSVTKKK 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phrNP_523653.2 phr2 93..547 CDD:129679 233/464 (50%)
DNA_photolyase 117..278 CDD:279247 77/160 (48%)
PHR1NP_849651.1 phr2 5..467 CDD:129679 233/462 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 314 1.000 Domainoid score I305
eggNOG 1 0.900 - - E1_COG0415
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H17893
Inparanoid 1 1.050 455 1.000 Inparanoid score I378
OMA 1 1.010 - - QHG62425
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0010657
OrthoInspector 1 1.000 - - oto4239
orthoMCL 1 0.900 - - OOG6_104135
Panther 1 1.100 - - LDO PTHR10211
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X8149
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.830

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