DRSC/TRiP Functional Genomics Resources

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Protein Alignment phr and Cry1

DIOPT Version :9

Sequence 1:NP_523653.2 Gene:phr / 35735 FlyBaseID:FBgn0003082 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_942045.2 Gene:Cry1 / 299691 RGDID:735083 Length:588 Species:Rattus norvegicus


Alignment Length:398 Identity:82/398 - (20%)
Similarity:139/398 - (34%) Gaps:97/398 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 VYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFL---NATIRHYKFMMGGLQEVEQQC 179
            |:|..:..|:.||.||    :..::....:..|:.|.|.|.   |..|..::|::..|::::...
  Rat     6 VHWFRKGLRLHDNPAL----KECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANL 66

  Fly   180 RALDIPFHLLMGSAVEKLPQFVKSKDIG--AVVCDFAPLRLPRQ----------WVE-------- 224
            |.|:....::.|...:..|:..|..:|.  ::..|..|....|.          .||        
  Rat    67 RKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHT 131

  Fly   225 --DVGKAL-------PKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSVFPPVV 280
              |:.|.:       |.:....|.....:.||       |..|.||.:.:..|....||     .
  Rat   132 LYDLDKIIELNGGQPPLTYKRFQTLVSKMEPL-------EMPADTITSDVIGKCTTPLS-----D 184

  Fly   281 RHPHGTGCKNVNTVDWSAAYASLQCDMEVDEVQWAKPGYKA-ACQQLYEFCSRRLRHFNDKRNDP 344
            .|....|..::..:.:.....|        ...|  ||.:. |..:|.....|:....|.:|...
  Rat   185 DHDEKYGVPSLEELGFDTDGLS--------SAVW--PGGETEALTRLERHLERKAWVANFERPRM 239

  Fly   345 TADAL----SGLSPWLHFGHISAQRCALEVQRFRGQHK-----ASADAFCEEAIVRRELADNFCF 400
            .|::|    :||||:|.||.:|   |.|...:....:|     :|........::.||.......
  Rat   240 NANSLLASPTGLSPYLRFGCLS---CRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAAT 301

  Fly   401 YNEHYDSLKG---------------LSSWA-----YQTLDAHRKDKRDPCYSLEELEKS-----L 440
            .|..:|.::|               |:.||     :..:||.....|...: :..|.:.     |
  Rat   302 NNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGW-IHHLARHAVACFL 365

  Fly   441 TYDDLWNS 448
            |..|||.|
  Rat   366 TRGDLWIS 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phrNP_523653.2 phr2 93..547 CDD:129679 82/398 (21%)
DNA_photolyase 117..278 CDD:279247 39/191 (20%)
Cry1NP_942045.2 DNA_photolyase 5..167 CDD:279247 33/171 (19%)
PhrB 6..491 CDD:223492 82/398 (21%)
LIR 1. /evidence=ECO:0000250|UniProtKB:P97784 50..54 0/3 (0%)
LIR 2. /evidence=ECO:0000250|UniProtKB:P97784 82..87 1/4 (25%)
LIR 3. /evidence=ECO:0000250|UniProtKB:P97784 151..156 1/4 (25%)
FAD_binding_7 213..486 CDD:281440 37/165 (22%)
LIR 4. /evidence=ECO:0000250|UniProtKB:P97784 255..260 3/4 (75%)
LIR 5. /evidence=ECO:0000250|UniProtKB:P97784 271..276 1/4 (25%)
LIR 6. /evidence=ECO:0000250|UniProtKB:P97784 285..290 0/4 (0%)
LIR 7. /evidence=ECO:0000250|UniProtKB:P97784 335..339 0/3 (0%)
Required for inhibition of CLOCK-ARNTL/BMAL1-mediated transcription. /evidence=ECO:0000250|UniProtKB:P97784 371..470 2/3 (67%)
LIR 8. /evidence=ECO:0000250|UniProtKB:P97784 379..384
LIR 9. /evidence=ECO:0000250|UniProtKB:P97784 395..400
LIR 10. /evidence=ECO:0000250|UniProtKB:P97784 411..416
LIR 11. /evidence=ECO:0000250|UniProtKB:P97784 430..435
Interaction with TIMELESS. /evidence=ECO:0000250|UniProtKB:P97784 471..493
LIR 12. /evidence=ECO:0000250|UniProtKB:P97784 486..491
LIR 13. /evidence=ECO:0000250|UniProtKB:P97784 492..497
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 511..588
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0415
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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