DRSC/TRiP Functional Genomics Resources

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Protein Alignment puml and LDH1

DIOPT Version :9

Sequence 1:NP_001286169.1 Gene:puml / 35733 FlyBaseID:FBgn0033226 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_009763.2 Gene:LDH1 / 852503 SGDID:S000000408 Length:375 Species:Saccharomyces cerevisiae


Alignment Length:422 Identity:80/422 - (18%)
Similarity:147/422 - (34%) Gaps:148/422 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 WLCNWTSSSPTMLRAVEK-----KILSYVKLPYRGFFVDIG---PAVGEADKIWTISMNTESKEV 113
            |.|. ..|..|:...|:.     .:::|::.|.    ||:.   ..:.|.::.:.:.::..:..:
Yeast    13 WSCE-PLSGKTLEEIVQNAENAADLVAYIRKPE----VDLDFRLKFIAEHEEFFNVQLSDRNSRI 72

  Fly   114 ---------------PLVLLHGLGAGIALWVMNLDAF--------AKGRPVYAMDILGFGRSSR- 154
                           ..|.:.|| ||      ||:.|        :..:....:|:.|||.||. 
Yeast    73 RTCHNLSDKGIRGDTVFVFVPGL-AG------NLEQFEPLLELVDSDQKAFLTLDLPGFGHSSEW 130

  Fly   155 ---PLFAK----DALVCEKQFVKSVEEWRREMNIND---------MILLGHSMGGFIASSYALSH 203
               |:...    ..|||:     .:.:|...:..||         ::|:|||||.|:|.      
Yeast   131 SDYPMLKVVELIFVLVCD-----VLRKWSTAVPNNDNVNPFNGHKIVLVGHSMGCFLAC------ 184

  Fly   204 PERVKHLILADPWGFPEKPSDSTNGKTIPLWVRAIARVLTP----LNPL--------WALRAAGP 256
                 ||       :.:..:|:...:|:.|        |||    :..|        |||  .|.
Yeast   185 -----HL-------YEQHMADTKAVQTLVL--------LTPPKAHIEQLSKDKHIIQWAL--YGV 227

  Fly   257 FG-QWV--VQKTRPDIMRKFQSTIEEDINLLPQYIHQ----------------CNAQNPSGESAF 302
            |. .|:  |.:.:.|.::..||      :.:.||.:|                .|..|.|.....
Yeast   228 FKLPWLFDVYRNKFDQVKGLQS------SGIKQYFYQQGDDVKLKYRKFWQFKNNISNKSRTIIG 286

  Fly   303 HTM-MQSFGWAKHPMIHRIKDVRSDI--------PITFIYGSRSWIDSSSGEKIKSQRGSNMVDI 358
            :.: .::..|.|...:....|::..|        ||..|.....:..:.:.|.::.        :
Yeast   287 YLLGWETVDWVKFNGVLTQTDMKQKIIIFGAEKDPIAPIENLEFYKQTINKECLRK--------V 343

  Fly   359 KIVTGAGHHVYADKPD-VFNRYVNETCDMYKV 389
            .|:....|::..|:|: |...:..|..|..|:
Yeast   344 IILPDCSHNLCFDRPELVCENFQREVIDNSKL 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pumlNP_001286169.1 MhpC 114..382 CDD:223669 67/333 (20%)
Abhydrolase_5 114..>226 CDD:289465 32/136 (24%)
LDH1NP_009763.2 EstA 4..375 CDD:224001 79/420 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157341689
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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